PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987591.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YA
Protein Properties Length: 341aa    MW: 38414.1 Da    PI: 9.7839
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.51.9e-32184240158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ++p+YVNaKQy++Il+RRq+Rak+e +kk+ +ksrkpylheSRh+hA++R+Rg+gGrF
  XP_024987591.1 184 EDPVYVNAKQYHGILRRRQSRAKAELKKKV-IKSRKPYLHESRHQHAMKRARGCGGRF 240
                     58****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MNGFEFSFSI ILKIPIFYSL PTTGFGVRIT GFMVNLMESR TMPAKPQDED RRREAEEQNI  60
SPSAVYSQPW WHGIGNGVMS SFGETNGVIK VGAQLQTTSD AVAEDTDAST VPQSGLNMNN  120
GQEQQVKQVE TSSPMELVGH SIVLTSYPYQ DTHFTGMMTY GTQAHPRLLG IHQTRMPLPL  180
QTEEDPVYVN AKQYHGILRR RQSRAKAELK KKVIKSRKPY LHESRHQHAM KRARGCGGRF  240
LNTKKLGSDS TANSTAQKEP KSMSTQSFNS DHLSTDYAGN SSIFEDVLKR NTSSNGNNND  300
HHSLSSTYNF HLMGREEGVH YFKREKGNMV NQVPKRDPYY K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.22e-43NF-YA family protein