PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024987412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27870.5 Da PI: 9.4668 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.4 | 6e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRr g+lKKA+ELSvLCdaeva+i+fss+g+lyey+ XP_024987412.1 24 KRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73 79***********************************************8 PP | |||||||
2 | K-box | 115.8 | 4e-38 | 95 | 188 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ea+a+ +qqe+akL+ +i nLq+++R+++Ge+L+++ k+L++Le++Lek++++iRskKnell+++ie++qk+e+el++ n+ Lr+k++e XP_024987412.1 95 GSVAEANAQFYQQEAAKLRHQIANLQNQNRNIMGESLGNMPAKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKRENELHNSNQFLRAKIAE 188 45899**************************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MSFPNDSGEM SPQRKLGRGK IEIKRIENTT NRQVTFCKRR SGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYANNSVKGT IDRYKKACLD PPSSGSVAEA NAQFYQQEAA KLRHQIANLQ 120 NQNRNIMGES LGNMPAKDLK NLESKLEKGI SRIRSKKNEL LFAEIEYMQK RENELHNSNQ 180 FLRAKIAENE RAQQQHMSLM PGSSDYDQLV APHQPFDGRN YLQVNDLQPN NNYSCQDQTP 240 LQLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-123 | MIKC_MADS family protein |