PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987282.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 373aa MW: 42321.8 Da PI: 6.2802

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.9	8.1e-16	54	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ k+++lg ++++e Aa+ ++ a++k++g XP_024987282.1 54 SIYRGVTRHRWTGRFEAHLWDkSTWNSiqnKKgKQIYLGAYDSEEAAARTYDLAALKYWG 113 57*****************666688866447***********************98 PP
2	AP2	51.3	2.8e-16	156	208	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + +k+ +lg++ t eeAa+a++ a+ +++g+ XP_024987282.1 156 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYSTQEEAAAAYDLAAIEYRGA 208 89**99******988422...5***********************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MKRRRLSPTS SCSSSSSCIN EEPQIPKPKR PSRPHTKNNL NSNQNAAETN RRSSIYRGVT 60 RHRWTGRFEA HLWDKSTWNS IQNKKGKQIY LGAYDSEEAA ARTYDLAALK YWGPETTLNF 120 QMDTYKKEIE EMEKLSKDEY LASLRRRSSG FSRGVSKYRG VARHHHNGRW EARIGRVLGN 180 KYLYLGTYST QEEAAAAYDL AAIEYRGAKA VTNFDISIYA DRLKNGVPQI EANPESNELV 240 ASPENEQNEV VHHDVHFQQE QQLELVEKQE PLPEIHNLDF PPSVEDEHPW SLCLDSNYNL 300 LPVPHIPLDK SGEMLDLFDD TGFEDNIDII FDGPFLNGNE LEKVHACITS PSSSSSLSSS 360 STTTSISYPI SHG

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MKRRRLSPTS SCSSSSSCIN EEPQIPKPKR PSRPHTKNNL NSNQNAAETN RRSSIYRGVT  60
RHRWTGRFEA HLWDKSTWNS IQNKKGKQIY LGAYDSEEAA ARTYDLAALK YWGPETTLNF  120
QMDTYKKEIE EMEKLSKDEY LASLRRRSSG FSRGVSKYRG VARHHHNGRW EARIGRVLGN  180
KYLYLGTYST QEEAAAAYDL AAIEYRGAKA VTNFDISIYA DRLKNGVPQI EANPESNELV  240
ASPENEQNEV VHHDVHFQQE QQLELVEKQE PLPEIHNLDF PPSVEDEHPW SLCLDSNYNL  300
LPVPHIPLDK SGEMLDLFDD TGFEDNIDII FDGPFLNGNE LEKVHACITS PSSSSSLSSS  360
STTTSISYPI SHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	6	KRRRL
2	2	29	KRRRLSPTSSCSSSSSCINEEPQIPKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.1	3e-94	AP2 family protein