PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987235.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 510aa MW: 56701.5 Da PI: 5.7536

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	317	362	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L XP_024987235.1 317 NHVEAERQRREKLNQRFYALRSVVPNV-----SRMDKASLLADAVCYINEL 362 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MDDFIVSPSS SSSIVSFPKT TIPPPSDHTL QQKLQHLLQS QPQPWAYAIF WQTFNDDSNG 60 CVSLSWGDGH LQSNNDLPIT TLPSTSGGSA TFLSDLEPDS RKSLIREIQA LLGPDNRDDA 120 EWFYVISLTR SFTPGDGSVP GTAFGSNTMI WLSGVDQLRS FNCERAKEAR IHGLETLVCI 180 PTPNGVLEIG SHHVIEESWN LAHQAQSVFG GXSYNLNDDH HNIISFADMM FMAGGLQEEG 240 MNTIDFESTT PDNQMSKNVE KLYINKSNTT AATTMNTYAE TASEHSDSDC QLVLATTERR 300 IQKKKGKKPG GRDPPVNHVE AERQRREKLN QRFYALRSVV PNVSRMDKAS LLADAVCYIN 360 ELKAKVEYLE SQLHSRINHQ GKTKKMKVEV ADTADNPLQT SDTYSLYQSR VSTKPILKIN 420 NKATIKNNIS GFGEVEVKIV GEDAMIRVQS GNADLPPAKL MDALREMKAQ IQHASMSCVN 480 EIMLQDVVVR IPGAIDEDEL KTDLIRRLDR

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MDDFIVSPSS SSSIVSFPKT TIPPPSDHTL QQKLQHLLQS QPQPWAYAIF WQTFNDDSNG  60
CVSLSWGDGH LQSNNDLPIT TLPSTSGGSA TFLSDLEPDS RKSLIREIQA LLGPDNRDDA  120
EWFYVISLTR SFTPGDGSVP GTAFGSNTMI WLSGVDQLRS FNCERAKEAR IHGLETLVCI  180
PTPNGVLEIG SHHVIEESWN LAHQAQSVFG GXSYNLNDDH HNIISFADMM FMAGGLQEEG  240
MNTIDFESTT PDNQMSKNVE KLYINKSNTT AATTMNTYAE TASEHSDSDC QLVLATTERR  300
IQKKKGKKPG GRDPPVNHVE AERQRREKLN QRFYALRSVV PNVSRMDKAS LLADAVCYIN  360
ELKAKVEYLE SQLHSRINHQ GKTKKMKVEV ADTADNPLQT SDTYSLYQSR VSTKPILKIN  420
NKATIKNNIS GFGEVEVKIV GEDAMIRVQS GNADLPPAKL MDALREMKAQ IQHASMSCVN  480
EIMLQDVVVR IPGAIDEDEL KTDLIRRLDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	1e-58	bHLH family protein