PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987228.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 513aa MW: 56823 Da PI: 6.0336

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.6e-12	320	365	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L XP_024987228.1 320 NHVEAERQRREKLNQRFYALRSVVPNV-----SRMDKASLLADAVCYINEL 365 799*********************6.....4*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MDDLIVSPSS SSSIVSFPKT TIPPPSDHTL QQKLQHLLQS QPQPWAYAIF WQTFNDDSNG 60 CVSLSWGDGH LQSNNDLPIT TLPSTSGGSA TFLSDLEPDS RKSLIREIQA LLGPDNRADA 120 EWFYVISLTR SFTPGDGSVP GTAFGSNTLI WLSGVDQLRS FNCERAKEAR IHGLETLVCI 180 PTPNGVLEIG SHHVIEESWN LAHQAQSVFG GVSSSLNNLN DDHHNIISFA DMMFMAGGLQ 240 EEGMNTIDFE STTPDNQMSK NVEKLYINKS NTTAATTMNT YAETASEHSD SDCQLVLATT 300 ERRIQKKKGK KPGGRDPPVN HVEAERQRRE KLNQRFYALR SVVPNVSRMD KASLLADAVC 360 YINELKAKVE YLESQLHSRI NHQGKTKKMK VEVADTADNP LQTSDTYSLY QSRVSTKPIL 420 KINNKATIKN NISGFGEVEV KIVGEDAMIR VQSGNANLPP AKLMDALREM KAQIQHASMS 480 CVNEIMLQDV VVRIPGAIDE DELKTDLIRR LDR

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MDDLIVSPSS SSSIVSFPKT TIPPPSDHTL QQKLQHLLQS QPQPWAYAIF WQTFNDDSNG  60
CVSLSWGDGH LQSNNDLPIT TLPSTSGGSA TFLSDLEPDS RKSLIREIQA LLGPDNRADA  120
EWFYVISLTR SFTPGDGSVP GTAFGSNTLI WLSGVDQLRS FNCERAKEAR IHGLETLVCI  180
PTPNGVLEIG SHHVIEESWN LAHQAQSVFG GVSSSLNNLN DDHHNIISFA DMMFMAGGLQ  240
EEGMNTIDFE STTPDNQMSK NVEKLYINKS NTTAATTMNT YAETASEHSD SDCQLVLATT  300
ERRIQKKKGK KPGGRDPPVN HVEAERQRRE KLNQRFYALR SVVPNVSRMD KASLLADAVC  360
YINELKAKVE YLESQLHSRI NHQGKTKKMK VEVADTADNP LQTSDTYSLY QSRVSTKPIL  420
KINNKATIKN NISGFGEVEV KIVGEDAMIR VQSGNANLPP AKLMDALREM KAQIQHASMS  480
CVNEIMLQDV VVRIPGAIDE DELKTDLIRR LDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	4e-57	bHLH family protein