PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987198.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 942aa MW: 103835 Da PI: 4.8388

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987198.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58	2.1e-18	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_024987198.1 37 KGQWTAEEDETLCKAVQQFNGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799**************************9.**********986 PP
2	Myb_DNA-binding	63.5	4.1e-20	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++v+q+G + W+tIa++++ gR +kqc++rw+++l XP_024987198.1 89 KGPWSKEEDEVIVRLVEQYGAKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	46.2	1.1e-14	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eE++ l++a++ +G++ W+ + ++ gR+++ +k++w+ XP_024987198.1 141 KEAWSQEEELALINAHQIYGNK-WAELTKFLP-GRSDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence
MESDLTMTVS SDGLSKGLQK MRSLNGRTSG PTRRSTKGQW TAEEDETLCK AVQQFNGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEVI VRLVEQYGAK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPNIN KEAWSQEEEL ALINAHQIYG NKWAELTKFL PGRSDNAIKN 180 HWNSSVKKKL DSYLASGLLA QSQGLPRFSH TNQSTASTSS WVQQYSGDDS IPKDITETED 240 VSDCSQGSTF GGCSKATMAN AIAGYAQNES QSAENSNQDL GSYPSSDKDW QISSNELQKI 300 PSLDLSEDSE FINCIDVDQN HEVAPYPTQS SVNFGASTSI GNLVVASDVA EHMLMSEDDC 360 SRVIYPPDGS TLSYASENLY KCPNSNEDGS ADSLIYQPSN GEVPNDSNIN SQSYYSDLLG 420 TPCYQSICMP LQPPSGQGTN NFNSESNQFN GPSINNQELP VHAHNGLPYA NDSSNTDFCN 480 SQDIVGSQNH RDQVNDSLEV VPTDAFSLAQ LQSDPSVDQV HVSETEQHDT GVLSYDPPRF 540 PSLDIPFFSC DLVQYGGEMQ HEYSPLGIRK LMMSSGNCFS PYRLWDSPSR ADSPEAVLKS 600 AAKTFTGTPS ILKKRNRDLC SPLSEKRCEK KLERTSFSNL ARDFSRLEVM FDDSKSQESP 660 SFSHKEDYGP FVEDKENVIP ATEGREKDGG NSTITKSCQV QQSSGVLTER NLDNLSFFSP 720 DKFTTKADTP KGPNAKISGK TSSSSSEVVP DHVTAMASSC DNPCQSLVSP HTVSGKKAGS 780 CLVASMHSAP NTVEKSGNDA SVETFGLFGE TPFKRSFDSP SAWKSPWFSF LPGPRVDTDI 840 TIEDIGYFVS PRERSYDALG LMKQLSEHTA PAYANAQEVL GDETPDSILK KRYEEKGERS 900 RQESNLLTER RVLDFSECGS PSKGTEGASF SSPSSYLLKG CR

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence

MESDLTMTVS SDGLSKGLQK MRSLNGRTSG PTRRSTKGQW TAEEDETLCK AVQQFNGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEVI VRLVEQYGAK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPNIN KEAWSQEEEL ALINAHQIYG NKWAELTKFL PGRSDNAIKN  180
HWNSSVKKKL DSYLASGLLA QSQGLPRFSH TNQSTASTSS WVQQYSGDDS IPKDITETED  240
VSDCSQGSTF GGCSKATMAN AIAGYAQNES QSAENSNQDL GSYPSSDKDW QISSNELQKI  300
PSLDLSEDSE FINCIDVDQN HEVAPYPTQS SVNFGASTSI GNLVVASDVA EHMLMSEDDC  360
SRVIYPPDGS TLSYASENLY KCPNSNEDGS ADSLIYQPSN GEVPNDSNIN SQSYYSDLLG  420
TPCYQSICMP LQPPSGQGTN NFNSESNQFN GPSINNQELP VHAHNGLPYA NDSSNTDFCN  480
SQDIVGSQNH RDQVNDSLEV VPTDAFSLAQ LQSDPSVDQV HVSETEQHDT GVLSYDPPRF  540
PSLDIPFFSC DLVQYGGEMQ HEYSPLGIRK LMMSSGNCFS PYRLWDSPSR ADSPEAVLKS  600
AAKTFTGTPS ILKKRNRDLC SPLSEKRCEK KLERTSFSNL ARDFSRLEVM FDDSKSQESP  660
SFSHKEDYGP FVEDKENVIP ATEGREKDGG NSTITKSCQV QQSSGVLTER NLDNLSFFSP  720
DKFTTKADTP KGPNAKISGK TSSSSSEVVP DHVTAMASSC DNPCQSLVSP HTVSGKKAGS  780
CLVASMHSAP NTVEKSGNDA SVETFGLFGE TPFKRSFDSP SAWKSPWFSF LPGPRVDTDI  840
TIEDIGYFVS PRERSYDALG LMKQLSEHTA PAYANAQEVL GDETPDSILK KRYEEKGERS  900
RQESNLLTER RVLDFSECGS PSKGTEGASF SSPSSYLLKG CR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	0.0	MYB family protein