PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987197.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 966aa MW: 106503 Da PI: 4.797

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58	2.2e-18	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_024987197.1 37 KGQWTAEEDETLCKAVQQFNGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799**************************9.**********986 PP
2	Myb_DNA-binding	63.5	4.2e-20	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++v+q+G + W+tIa++++ gR +kqc++rw+++l XP_024987197.1 89 KGPWSKEEDEVIVRLVEQYGAKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	46.1	1.1e-14	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eE++ l++a++ +G++ W+ + ++ gR+++ +k++w+ XP_024987197.1 141 KEAWSQEEELALINAHQIYGNK-WAELTKFLP-GRSDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 966 aa Download sequence
MESDLTMTVS SDGLSKGLQK MRSLNGRTSG PTRRSTKGQW TAEEDETLCK AVQQFNGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEVI VRLVEQYGAK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPNIN KEAWSQEEEL ALINAHQIYG NKWAELTKFL PGRSDNAIKN 180 HWNSSVKKKL DSYLASGLLA QSQGLPRFSH TNQSTASTSS WVQQYSGDDS IPKDITETED 240 VSDCSQGSTF GGCSKATMAN AIAGYAQNES QSAENSNQDL GSYPSSGLPC ELSDSSKMVE 300 QCFSHDWVTS DKDWQISSNE LQKIPSLDLS EDSEFINCID VDQNHEVAPY PTQSSVNFGA 360 STSIGNLVVA SDVAEHMLMS EDDCSRVIYP PDGSTLSYAS ENLYKCPNSN EDGSADSLIY 420 QPSNGEVPND SNINSQSYYS DLLGTPCYQS ICMPLQPPSG QGTNNFNSES NQFNGPSINN 480 QELPVHAHNG LPYANDSSNT DFCNSQDIVG SQNHRDQVND SLEVVPTDAF SLAQLQSDPS 540 VDQVHVSETE QHDTGVLSYD PPRFPSLDIP FFSCDLVQYG GEMQHEYSPL GIRKLMMSSG 600 NCFSPYRLWD SPSRADSPEA VLKSAAKTFT GTPSILKKRN RDLCSPLSEK RCEKKLERTS 660 FSNLARDFSR LEVMFDDSKS QESPSFSHKE DYGPFVEDKE NVIPATEGRE KDGGNSTITK 720 SCQVQQSSGV LTERNLDNLS FFSPDKFTTK ADTPKGPNAK ISGKTSSSSS EVVPDHVTAM 780 ASSCDNPCQS LVSPHTVSGK KAGSCLVASM HSAPNTVEKS GNDASVETFG LFGETPFKRS 840 FDSPSAWKSP WFSFLPGPRV DTDITIEDIG YFVSPRERSY DALGLMKQLS EHTAPAYANA 900 QEVLGDETPD SILKKRYEEK GERSRQESNL LTERRVLDFS ECGSPSKGTE GASFSSPSSY 960 LLKGCR

Sequence ? help Back to Top

Protein Sequence Length: 966 aa Download sequence

MESDLTMTVS SDGLSKGLQK MRSLNGRTSG PTRRSTKGQW TAEEDETLCK AVQQFNGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEVI VRLVEQYGAK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPNIN KEAWSQEEEL ALINAHQIYG NKWAELTKFL PGRSDNAIKN  180
HWNSSVKKKL DSYLASGLLA QSQGLPRFSH TNQSTASTSS WVQQYSGDDS IPKDITETED  240
VSDCSQGSTF GGCSKATMAN AIAGYAQNES QSAENSNQDL GSYPSSGLPC ELSDSSKMVE  300
QCFSHDWVTS DKDWQISSNE LQKIPSLDLS EDSEFINCID VDQNHEVAPY PTQSSVNFGA  360
STSIGNLVVA SDVAEHMLMS EDDCSRVIYP PDGSTLSYAS ENLYKCPNSN EDGSADSLIY  420
QPSNGEVPND SNINSQSYYS DLLGTPCYQS ICMPLQPPSG QGTNNFNSES NQFNGPSINN  480
QELPVHAHNG LPYANDSSNT DFCNSQDIVG SQNHRDQVND SLEVVPTDAF SLAQLQSDPS  540
VDQVHVSETE QHDTGVLSYD PPRFPSLDIP FFSCDLVQYG GEMQHEYSPL GIRKLMMSSG  600
NCFSPYRLWD SPSRADSPEA VLKSAAKTFT GTPSILKKRN RDLCSPLSEK RCEKKLERTS  660
FSNLARDFSR LEVMFDDSKS QESPSFSHKE DYGPFVEDKE NVIPATEGRE KDGGNSTITK  720
SCQVQQSSGV LTERNLDNLS FFSPDKFTTK ADTPKGPNAK ISGKTSSSSS EVVPDHVTAM  780
ASSCDNPCQS LVSPHTVSGK KAGSCLVASM HSAPNTVEKS GNDASVETFG LFGETPFKRS  840
FDSPSAWKSP WFSFLPGPRV DTDITIEDIG YFVSPRERSY DALGLMKQLS EHTAPAYANA  900
QEVLGDETPD SILKKRYEEK GERSRQESNL LTERRVLDFS ECGSPSKGTE GASFSSPSSY  960
LLKGCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein