PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024987102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24985.4 Da PI: 7.9933 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.6 | 6.4e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA r+ +Pv+Gavg++++++++++q+ XP_024987102.1 2 SCNGCRVLRKGCSDNCILRPCLqwidtPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 +++++l+ XP_024987102.1 97 SVDTVLR 103 9998765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MSCNGCRVLR KGCSDNCILR PCLQWIDTPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PSLFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQASVDT VLRGGTLRPI PELNDGFPTM 120 PKLGDSFQTD ATFPDILKLQ DPVTHPRSKV QRRRRACEPP SNMTQSQDLD LNLNQSFPAV 180 KGSPEKRRQG SPSMNSEDSV TTTCLDGGFG EYSYIQGGGE VHLLNLFK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 3e-80 | LBD family protein |