PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987028.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 507aa MW: 58847.6 Da PI: 8.3014

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.5	4.4e-18	134	228	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Y++YA+e+GF+vr ++k + + g+it+r +vCskeg+++++ + ++ r+++ +r gC +lk++ k +++ev+k++++HnH l XP_024987028.1 134 IYRKYANEAGFDVRLCNKKIN-KLGRITSRFYVCSKEGRPQSKYFDsldvlpGGRRIRNSNIKRSGCGTCLKIHFVKePNQYEVYKFVEQHNHIL 227 7************998877.7777************9999999999899999************99989************99 PP FAR1 90 a 90 + XP_024987028.1 228 F 228 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MDPISFNETF IKDIFDEIGG INGKRKGVDL VREIATAAND VTTQDKCNYS ARDEDGCIRQ 60 NETIHERSDL ITDGVSAEFD NDDVASLSNE SEDYRSQDME ETFDGSKYGF PSVDVKYNPK 120 VGDSFEFVES AEKIYRKYAN EAGFDVRLCN KKINKLGRIT SRFYVCSKEG RPQSKYFDSL 180 DVLPGGRRIR NSNIKRSGCG TCLKIHFVKE PNQYEVYKFV EQHNHILFNK EEMRFSRSKR 240 QLHYVDHKNV FHGSSSKVGV TKSHRFMKAV KGGVDSSGGT VRDHQNFKRD MAYFVGNKDA 300 QMLLNVMANR RKVCPEFFFE YKFDDMELLA TFWAGETARS NYREFGDAIS FDATFRTNKH 360 AMIFVPFVAI DNHKKSIVVG AALIHNESVV DYTWVLKVFV KAHGRQPRFV IIDQCASMKQ 420 AIPITFFESK NRLCMWHIIK KVKSKISNYL QHRTQFAREF NKLVWNVHLV PNEFEMQWNN 480 LIEFYGLRGD PWSDELYDIR ESWIPAY

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MDPISFNETF IKDIFDEIGG INGKRKGVDL VREIATAAND VTTQDKCNYS ARDEDGCIRQ  60
NETIHERSDL ITDGVSAEFD NDDVASLSNE SEDYRSQDME ETFDGSKYGF PSVDVKYNPK  120
VGDSFEFVES AEKIYRKYAN EAGFDVRLCN KKINKLGRIT SRFYVCSKEG RPQSKYFDSL  180
DVLPGGRRIR NSNIKRSGCG TCLKIHFVKE PNQYEVYKFV EQHNHILFNK EEMRFSRSKR  240
QLHYVDHKNV FHGSSSKVGV TKSHRFMKAV KGGVDSSGGT VRDHQNFKRD MAYFVGNKDA  300
QMLLNVMANR RKVCPEFFFE YKFDDMELLA TFWAGETARS NYREFGDAIS FDATFRTNKH  360
AMIFVPFVAI DNHKKSIVVG AALIHNESVV DYTWVLKVFV KAHGRQPRFV IIDQCASMKQ  420
AIPITFFESK NRLCMWHIIK KVKSKISNYL QHRTQFAREF NKLVWNVHLV PNEFEMQWNN  480
LIEFYGLRGD PWSDELYDIR ESWIPAY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-45	FAR1 family protein