PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024987011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | C2H2 | ||||||||
Protein Properties | Length: 508aa MW: 56310.8 Da PI: 9.2016 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 91 | 111 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_024987011.1 91 CEICNKGFQRDQNLQLHRRGH 111 *******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00047 | 166 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_024987011.1 166 WKCEKCSKRYAVQSDWKAHSKIC 188 58*****************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence |
MKGMFLDDSM SNLTSASNEA SLSSSSNKNE VGTMYPPPQQ MQQSFASVPI NSNNQTQTNK 60 KKRNLPGNPD PEAEVVAMSP KSLMATNRFL CEICNKGFQR DQNLQLHRRG HNLPWKLKQR 120 SKQEVVRKKV YVCPEPSCVH HEPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD 180 WKAHSKICGT REHRCDCGTL FSRRDSFITH RAFCGALAGE NARSSSSSLL SPNHLPLHLP 240 INYPLKSEPH LFQRPQVLNS NIITNTLQNH QLPSWFVHHH QENPSPNNNN NNNNLHLPSP 300 SSPPHMSATA LLQKAAQMGV TMSKPAASTN TAIVMSQQQQ QQHQSIPNGP HQNDHMCAST 360 LLTAHHHDSG LENLSCSDDD HHAMLGLKGS TALQEAFNGM LNSTKGIHNT GFQEAFFRQA 420 SEASLNPTKG GGGGGRGGGG GGNDELTRDF LGLTGFPPPT ADHHHHLLNM AGLDPLNTSP 480 YHHHQQQQQQ QQQQHNLNQN QNQLPWNG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 129 | KLKQRSKQEVVRKK |
2 | 118 | 131 | KLKQRSKQEVVRKK |
3 | 432 | 442 | GGGGRGGGGGG |
4 | 433 | 443 | GGGGRGGGGGG |
5 | 434 | 444 | GGGGRGGGGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-104 | C2H2 family protein |