PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987009.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 545aa MW: 60056.1 Da PI: 8.8799

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	91	111	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_024987009.1 91 CEICNKGFQRDQNLQLHRRGH 111 *******************88 PP
2	zf-C2H2	12.3	0.00051	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_024987009.1 166 WKCEKCSKRYAVQSDWKAHSKIC 188 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MKGMFLDDSM SNLTSASNEA SLSSSSNKNE VGTMYPPPQQ MQQSFASVPI NSNNQTQTNK 60 KKRNLPGNPD PEAEVVAMSP KSLMATNRFL CEICNKGFQR DQNLQLHRRG HNLPWKLKQR 120 SKQEVVRKKV YVCPEPSCVH HEPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD 180 WKAHSKICGT REHRCDCGTL FSRRDSFITH RAFCGALAGE NARSSSSSLL SPNHLPLHLP 240 INYPLKSEPH LFQRPQVLNS NIITNTLQNH QLPSWFVHHH QENPSPNNNN NNNNLHLPSP 300 SSPPHMSATA LLQKAAQMGV TMSKPAASTN TAIVMSQQQQ QQHQSIPNGP HQNDHMCAST 360 LLTAHHHDSG LENLSCSDDD HHAMLGLKGG FANVSMAGCL DQIGATTMHA HSQMLHTNSL 420 ACTSVGSTAL QEAFNGMLNS TKGIHNTGFQ EAFFRQASEA SLNPTKGGGG GGRGGGGGGN 480 DELTRDFLGL TGFPPPTADH HHHLLNMAGL DPLNTSPYHH HQQQQQQQQQ QHNLNQNQNQ 540 LPWNG

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MKGMFLDDSM SNLTSASNEA SLSSSSNKNE VGTMYPPPQQ MQQSFASVPI NSNNQTQTNK  60
KKRNLPGNPD PEAEVVAMSP KSLMATNRFL CEICNKGFQR DQNLQLHRRG HNLPWKLKQR  120
SKQEVVRKKV YVCPEPSCVH HEPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD  180
WKAHSKICGT REHRCDCGTL FSRRDSFITH RAFCGALAGE NARSSSSSLL SPNHLPLHLP  240
INYPLKSEPH LFQRPQVLNS NIITNTLQNH QLPSWFVHHH QENPSPNNNN NNNNLHLPSP  300
SSPPHMSATA LLQKAAQMGV TMSKPAASTN TAIVMSQQQQ QQHQSIPNGP HQNDHMCAST  360
LLTAHHHDSG LENLSCSDDD HHAMLGLKGG FANVSMAGCL DQIGATTMHA HSQMLHTNSL  420
ACTSVGSTAL QEAFNGMLNS TKGIHNTGFQ EAFFRQASEA SLNPTKGGGG GGRGGGGGGN  480
DELTRDFLGL TGFPPPTADH HHHLLNMAGL DPLNTSPYHH HQQQQQQQQQ QHNLNQNQNQ  540
LPWNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	129	KLKQRSKQEVVRKK
2	118	131	KLKQRSKQEVVRKK
3	469	479	GGGGRGGGGGG
4	470	480	GGGGRGGGGGG
5	471	481	GGGGRGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-103	C2H2 family protein