PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986974.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 338aa MW: 36345 Da PI: 9.4719

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81	1e-25	72	115	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs++v++g+k+CErH+hrgr+rsrk++e XP_024986974.1 72 DPEPGRCRRTDGKKWRCSKDVVGGHKYCERHIHRGRNRSRKPVE 115 79***************************************987 PP
2	QLQ	38	5.3e-14	5	35	2	32
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +F+ Q+q+L+ Q+l+y++++ + P+P++L+ XP_024986974.1 5 YFNMGQWQELEVQALIYRHMLTGSPIPHQLI 35 79***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MMQGYFNMGQ WQELEVQALI YRHMLTGSPI PHQLIHLLLN SNSTSNSSFY PLSNFPPLYQ 60 TGGGYWGRGG MDPEPGRCRR TDGKKWRCSK DVVGGHKYCE RHIHRGRNRS RKPVEIPTPT 120 TSTVGGGGGG DYGGGVVKKS NISSYAAATT TATATGSLCG AQPYTTAGGG SSDCGGGLSG 180 HSSFFDQLHL NQRISKTTVD NKGSTYRSSE NDNKSSDGRI LRPFFDDWPR TVQQQEMLAT 240 SLSISVQGDT PSDFSLKLST GNGGDMGRRG LESNEERERG RLNWGMQWGT HHGGSMGGPL 300 AEALRSSSTS NSSSPTSVLH QLQRGSTTTT SGTSYVST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	4e-37	GRF family protein