PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986896.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 1152aa MW: 129382 Da PI: 8.677

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.4e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e +++a +++G + W+++a+ + +Rt++++ XP_024986896.1 46 HWSKDELEHFYEAYRKHGRD-WRKVAAVLR-NRTAEMV 81 5***************77.*****.*9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1152 aa Download sequence
MGPTRKSRSV NKRFSYSDEI SPTKDGDTTN KKNQRKKKLS DMLGSHWSKD ELEHFYEAYR 60 KHGRDWRKVA AVLRNRTAEM VEAVYSLNKA YLSLPEGTAS VVGFIAMMTD YYSNMEEGDS 120 EHERNDGVET SRKPQKRLQR KVHETTSKGS VERFRSHPDA VPSDYGCLSL LKKKRSGGSR 180 PRAVGKRTPR FPVSHAYENI KGEKYFLQTR KGLKLRADND DDVAHSIALA LTEASKRGGS 240 PQVSQTPNRR SDSLMSSPCR SAERMYDESD VASGWFVDND TYDDDIEGSM EADNTDFSRD 300 KSKERTNAGY MLHDRKGSQV KKVRVDRKEN KHLEYIREAC SGTEGQNLGT LRRNFDVEVA 360 DAKPSRPSSQ GSKRRSKEAH TGRDETSAFD ALETLANLSL MILPEANEAA KEGKVEHVDD 420 SHLLLPMPAS RHKEKRKSLA LSSNGYQSIS RLESADNKPQ TSAKDLVDDT NVASEAKESH 480 QLITKVSRKR QKIVAPKISK AEAPIDSTPI ESLEAEATHA AQMPLNKHIS QSSSPQLVKH 540 SQHVCSTNHS KRDVRNSALS DVHVSEMNPS NIRTKVRSKR KMNKPEALEA AKFSDVVGTD 600 KSSVHLPSLS HRTDKLKGKL SNSLSNQLMR RWCAFEWFYS AIDDPWFAKR EFVEYLYHVG 660 LGHVPRLTRV EWGVIRSSLG KPRRFSRQFL KEEKDKLNQY RDSVRTHYTE LRSGSRDGLP 720 TDLARPLSVG QCVIAIYPRT REIHDGTVLT VDNNRCCVQF DRPELGVEKI MDTDCMPLNP 780 FENMPASLMR RTPVDKFFES LKEAQMNGLG RDQRLEGYTK CSSHEKLENM DEVASVKSDL 840 QSRYGPRDFA SNHHAAYTMP GTLAQIQAKE LDVEAIAELT RALDKKEAVV FELRRMNDDV 900 LENQTDGDFS LQDSDAFKKQ YAAVLVQLNE ANAQVSSALY RLRQRNTYQR NLHLASWPRA 960 VGDLSDHGAI SSSSDHTTNR TEESECHVNE IVEMSRTRAR TMVDIAIQAM SSLKLNPTVE 1020 IDKAVDYVSD RIPSDESGIP PARPIASDPV PPSLSLHEQL VSTVKASDST PMNPSDSNKA 1080 SIPSELITHC VATLFVIQKC TERQFPPAEV ASILDSAVSS LQPCSPQNLQ VYAEIQKCMG 1140 IIKNQILALV PT

Sequence ? help Back to Top

Protein Sequence Length: 1152 aa Download sequence

MGPTRKSRSV NKRFSYSDEI SPTKDGDTTN KKNQRKKKLS DMLGSHWSKD ELEHFYEAYR  60
KHGRDWRKVA AVLRNRTAEM VEAVYSLNKA YLSLPEGTAS VVGFIAMMTD YYSNMEEGDS  120
EHERNDGVET SRKPQKRLQR KVHETTSKGS VERFRSHPDA VPSDYGCLSL LKKKRSGGSR  180
PRAVGKRTPR FPVSHAYENI KGEKYFLQTR KGLKLRADND DDVAHSIALA LTEASKRGGS  240
PQVSQTPNRR SDSLMSSPCR SAERMYDESD VASGWFVDND TYDDDIEGSM EADNTDFSRD  300
KSKERTNAGY MLHDRKGSQV KKVRVDRKEN KHLEYIREAC SGTEGQNLGT LRRNFDVEVA  360
DAKPSRPSSQ GSKRRSKEAH TGRDETSAFD ALETLANLSL MILPEANEAA KEGKVEHVDD  420
SHLLLPMPAS RHKEKRKSLA LSSNGYQSIS RLESADNKPQ TSAKDLVDDT NVASEAKESH  480
QLITKVSRKR QKIVAPKISK AEAPIDSTPI ESLEAEATHA AQMPLNKHIS QSSSPQLVKH  540
SQHVCSTNHS KRDVRNSALS DVHVSEMNPS NIRTKVRSKR KMNKPEALEA AKFSDVVGTD  600
KSSVHLPSLS HRTDKLKGKL SNSLSNQLMR RWCAFEWFYS AIDDPWFAKR EFVEYLYHVG  660
LGHVPRLTRV EWGVIRSSLG KPRRFSRQFL KEEKDKLNQY RDSVRTHYTE LRSGSRDGLP  720
TDLARPLSVG QCVIAIYPRT REIHDGTVLT VDNNRCCVQF DRPELGVEKI MDTDCMPLNP  780
FENMPASLMR RTPVDKFFES LKEAQMNGLG RDQRLEGYTK CSSHEKLENM DEVASVKSDL  840
QSRYGPRDFA SNHHAAYTMP GTLAQIQAKE LDVEAIAELT RALDKKEAVV FELRRMNDDV  900
LENQTDGDFS LQDSDAFKKQ YAAVLVQLNE ANAQVSSALY RLRQRNTYQR NLHLASWPRA  960
VGDLSDHGAI SSSSDHTTNR TEESECHVNE IVEMSRTRAR TMVDIAIQAM SSLKLNPTVE  1020
IDKAVDYVSD RIPSDESGIP PARPIASDPV PPSLSLHEQL VSTVKASDST PMNPSDSNKA  1080
SIPSELITHC VATLFVIQKC TERQFPPAEV ASILDSAVSS LQPCSPQNLQ VYAEIQKCMG  1140
IIKNQILALV PT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein