PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986773.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 273aa    MW: 30712.5 Da    PI: 6.0474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72.1e-08159206455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+++Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  XP_024986773.1 159 SHSIAERVRRGKINERLRCLQDIVPGC----YKSMGMAVMLDEIINYVQSLQ 206
                     8*************************8....3569999***********998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MEGFTSNFHS FKPSFSFIDV DQNMELLNQF SIQYDNPSMS SQNFMGFSND NFFSQQVLPP  60
PDYQFMQTFQ PVFQHEKKNV MVIPEPVPLG PVVNGKRKAT DVSASSSGNS SPNPVSENEI  120
DEKKYQSSGK GKKAKVSENG EVPKEVVHVR ARRGQATDSH SIAERVRRGK INERLRCLQD  180
IVPGCYKSMG MAVMLDEIIN YVQSLQNQVE FLSMKLTEAS RFPDFDSDSR PVVAYQMGNA  240
NGGVKMQRLE EREEIGPVDL SFGSYPSLPY HTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.15e-53bHLH family protein