PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986732.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Nin-like

Protein Properties

Length: 802aa MW: 88500.8 Da PI: 6.3913

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986732.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.6e-29	586	637	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l+++F++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_024986732.1 586 AEKSISLEVLQQHFAGSLKDAAKNLGVCPTTMKRICRQHGISRWPSRKINKV 637 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence
MPEAEEDNRS ANFFVRGTPV TEDLPVMMTM DLDLDGSWTF DQIFSADPSP SFILSATEQT 60 YSPLWAFSDD NNNNLNDADD KLAGNATLTS SGAAHRLQSD TDNHDQVTRK PSNNDVKRRI 120 PMPILEVNPS EYQDATCVIK ERMTMALRYF IELGEKHVLA QVWAPVKNRG RYVLTTCGQP 180 FVLDPNCTGL HQYRMASLMY VFSVDGETDG VLGLPARVFR HKLPEWTPNV QYYSDKEYQR 240 LNHALNYNVR GCLALPVFES SGQSCVGVLE LILTAQKINY APEVDKVCKA LEAVNLKSSD 300 ILDPPNSQAS IFPIKQICNE SRQNALAEIL EILAVVCETH NFPLAQTWVP CRHRSVLAYG 360 GGFKKSCSSF DGSCMGQVCM STTDVAFYVV DAHMWRFREA CAEHHLQKGQ GVAGRAFATR 420 SSCFCENITH FGKTEYPLVH YARMFGLVGS FAICLRSTHT GDDDYILEFF LPPNMVNGED 480 QQTMLGSLLT SMKQHFRSLT VACGEEIGED GRLVEIIKPS ANGEVIDSGI QSIRLSESVI 540 SNGGPLVRVD SLDRPLNVEP NGLNGTCGKS ETPETTKKSE RKRGKAEKSI SLEVLQQHFA 600 GSLKDAAKNL GVCPTTMKRI CRQHGISRWP SRKINKVNRS LTKLKRVIES VQGAEGTFTI 660 PSLATTPLPV GVDSTSWPTA PNGSPTNQQG SPGSRPYDSP RPKNDLGPNN QTSGSREAST 720 GSPTSHRSCQ ESQPFEVKAP NHAAEFSVSD AFLTAQTEEP FRGMLIEDAG SSHDLTNLCP 780 FTEPLEKICK NAWSCRYHRG VT

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence

MPEAEEDNRS ANFFVRGTPV TEDLPVMMTM DLDLDGSWTF DQIFSADPSP SFILSATEQT  60
YSPLWAFSDD NNNNLNDADD KLAGNATLTS SGAAHRLQSD TDNHDQVTRK PSNNDVKRRI  120
PMPILEVNPS EYQDATCVIK ERMTMALRYF IELGEKHVLA QVWAPVKNRG RYVLTTCGQP  180
FVLDPNCTGL HQYRMASLMY VFSVDGETDG VLGLPARVFR HKLPEWTPNV QYYSDKEYQR  240
LNHALNYNVR GCLALPVFES SGQSCVGVLE LILTAQKINY APEVDKVCKA LEAVNLKSSD  300
ILDPPNSQAS IFPIKQICNE SRQNALAEIL EILAVVCETH NFPLAQTWVP CRHRSVLAYG  360
GGFKKSCSSF DGSCMGQVCM STTDVAFYVV DAHMWRFREA CAEHHLQKGQ GVAGRAFATR  420
SSCFCENITH FGKTEYPLVH YARMFGLVGS FAICLRSTHT GDDDYILEFF LPPNMVNGED  480
QQTMLGSLLT SMKQHFRSLT VACGEEIGED GRLVEIIKPS ANGEVIDSGI QSIRLSESVI  540
SNGGPLVRVD SLDRPLNVEP NGLNGTCGKS ETPETTKKSE RKRGKAEKSI SLEVLQQHFA  600
GSLKDAAKNL GVCPTTMKRI CRQHGISRWP SRKINKVNRS LTKLKRVIES VQGAEGTFTI  660
PSLATTPLPV GVDSTSWPTA PNGSPTNQQG SPGSRPYDSP RPKNDLGPNN QTSGSREAST  720
GSPTSHRSCQ ESQPFEVKAP NHAAEFSVSD AFLTAQTEEP FRGMLIEDAG SSHDLTNLCP  780
FTEPLEKICK NAWSCRYHRG VT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein