PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024986700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | GRF | ||||||||
Protein Properties | Length: 160aa MW: 17643.1 Da PI: 8.6179 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.7 | 1e-23 | 101 | 145 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +aepgrC+RtDGKkWRC ++v+ g+k+CErHlhrgrsrsrk +e+ XP_024986700.1 101 EAEPGRCKRTDGKKWRCGKEVVIGHKYCERHLHRGRSRSRKDVEA 145 58***************************************9986 PP | |||||||
2 | QLQ | 48.1 | 3.5e-17 | 43 | 77 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT +Q ++Lk Q+l+yKy a++PvP++L+++i++ XP_024986700.1 43 FTFMQMEELKLQALIYKYVEAGLPVPSHLILPIWN 77 9*********************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence |
MEAVVGLVMN GVEGSASSTD SSSFLLQNSN YMSVISRNGG LGFTFMQMEE LKLQALIYKY 60 VEAGLPVPSH LILPIWNSVL TSLSGSGCDR SLYDNYKNSM EAEPGRCKRT DGKKWRCGKE 120 VVIGHKYCER HLHRGRSRSR KDVEADAIAA TAIDASHKNL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 1e-33 | GRF family protein |