PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986646.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CO-like

Protein Properties

Length: 382aa MW: 42385.2 Da PI: 6.1901

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.8	7.9e-07	18	58	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 r+C+++ + + +++C+ + +lC C +H H XP_024986646.1 18 RVCDTCRSAPCTIYCRPDAAYLCTACDARIHAAnklqssqH 58 79*****************************6555555566 PP
2	zf-B_box	29.1	2.1e-09	61	105	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ ++ + C+ + lC +C +H+ H +vp XP_024986646.1 61 VWVCEACEQAPAAFICKADAASLCTTCDADIHSAnplarrHHRVP 105 689*****************************6688999977776 PP
3	CCT	69.4	9.3e-24	313	356	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_024986646.1 313 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 356 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MLDQSSTLCL KSSTTWARVC DTCRSAPCTI YCRPDAAYLC TACDARIHAA NKLQSSQHER 60 VWVCEACEQA PAAFICKADA ASLCTTCDAD IHSANPLARR HHRVPVMPIP GALYGPQATD 120 PRSVMGLGVE SESGFLSHEA EDAIDDEDED EAASWLLFDA LPKNSQNQSG KENGFLFNGE 180 GGDDEYLEFM EFGNDDQAPQ QQCYKAAEKM YGGGDADSVV PVQKNHHQFH HQDFQHQKFQ 240 LGMEYHETSH AAGGYGYPPL SHSVSMSSLE VGVVPDSTRT DASLSHPRPS KGTIDLFSNP 300 PVQVPTQLNP MDREARVLRY REKKKTRKFE KTIRYASRKA YAETRPRIKG RFAKRTNADV 360 DVDQMFPTNH MVQGGYGIVP SF

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MLDQSSTLCL KSSTTWARVC DTCRSAPCTI YCRPDAAYLC TACDARIHAA NKLQSSQHER  60
VWVCEACEQA PAAFICKADA ASLCTTCDAD IHSANPLARR HHRVPVMPIP GALYGPQATD  120
PRSVMGLGVE SESGFLSHEA EDAIDDEDED EAASWLLFDA LPKNSQNQSG KENGFLFNGE  180
GGDDEYLEFM EFGNDDQAPQ QQCYKAAEKM YGGGDADSVV PVQKNHHQFH HQDFQHQKFQ  240
LGMEYHETSH AAGGYGYPPL SHSVSMSSLE VGVVPDSTRT DASLSHPRPS KGTIDLFSNP  300
PVQVPTQLNP MDREARVLRY REKKKTRKFE KTIRYASRKA YAETRPRIKG RFAKRTNADV  360
DVDQMFPTNH MVQGGYGIVP SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-104	CO-like family protein