PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986577.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family Trihelix
Protein Properties Length: 541aa    MW: 61776.6 Da    PI: 7.0755
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.62e-2999184187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_024986577.1  99 RWPRQETLTLLEVRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 184
                     8*************************************999*****************************98..55667*******85 PP
2trihelix52.41.4e-16402477276
        trihelix   2 WtkqevlaLiearremeerlrrg.klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                     W ++e+  Li++r++me+r+++g   ++ lWee+++km   g++r+ + Ck kw+++n    ++k+++++ +s +s
  XP_024986577.1 402 WGENEITRLIQLRTSMETRFEQGgYMEELLWEEIASKMTCLGYNRNGISCKTKWDSINEFLMRTKKRKENTRSSNS 477
                     *********************96268899*****************************999888888887644444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    
MEEQYGITDL THYMNGRPIF TAVPQPPPQP QPPHDLHYDM VMLGGGGGGA GGMLFRSDST  60
TGTGSTTASL SAGGGLEMEL GGGLEMEIGG GGCGGGNGRW PRQETLTLLE VRSRLDSKFK  120
EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY KKTKEGKAGR QDGKHYRFFR  180
QLEALYGETS TSINPNPNPN PASFPDPHNL NVETSPFQTH PHPNNSSYQE AFHQPPPSRL  240
CDSPSLSNNS SAFDTSSSGY SNPNAPMPPF MDNSDCADRT INKRRLGKRS WKTKIKEFID  300
AQMRKIMEKQ EEWMEKMMKS IEQKEQERVL REEQWRKEEA SRFEKEHKFW ANERAWMESR  360
DSALMEALHK ITGKESNHKS SPDHHNDRNN GKIDTTVNLT GWGENEITRL IQLRTSMETR  420
FEQGGYMEEL LWEEIASKMT CLGYNRNGIS CKTKWDSINE FLMRTKKRKE NTRSSNSYTH  480
HNNESLSHIF HHQVGSYRQA DERLMASNDQ QNDAGSYRFL MGDPENMWDG YGVKLTKGDD  540
H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-104Trihelix family protein