PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986558.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 529aa MW: 58126 Da PI: 6.5291

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.6	2.2e-08	354	401	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++ Lq XP_024986558.1 354 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQALQ 401 8***********************9....677**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MEKEKTFTNG GNGIPQPWNS IFGMEIQGSE LNCSTDRLRN CYFNPNCENS MDQRDLFESA 60 LSSIVSSPAN SHTGIPISGG GGGESIVLRE LIGRLGSICN SGEISPQSRI NGNHSNNTSC 120 YDTPLSSPPQ LNLSITENQI PGDLPIPGNH QLPLSPFPTD PVFVERAARF SSFGGKNFGL 180 KETEFPHVVE SAKMSRVSSS QSFKNGSQFM GIPDDKDRIG VSDKKFSRLA MSSTQENIEF 240 GDSMEESSVS EQIPGGETGM KSQSTNTNGR KRKGIPKGKG KETPSSTIYA KDDKVVAELE 300 KEESNAKRSK SDEQEKGMEK GEGNQKQTKG NPKPSEPPKD YIHVRAKRGQ ATDSHSLAER 360 VRREKISERM KFLQDLVPGC NKVTGKAVML DEIINYVQAL QRQVEFLSMK LATVSPRMDA 420 TMEALLSKDL FRSRVSVPTS MNPFENSTQP FPYGFQSQNN GIVLDGSENQ FSMNPLMAAM 480 HRNSIVKPSP VDGFAEASTF WENDLQSVVK MALGQDQPQS FHGQMKVEQ

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MEKEKTFTNG GNGIPQPWNS IFGMEIQGSE LNCSTDRLRN CYFNPNCENS MDQRDLFESA  60
LSSIVSSPAN SHTGIPISGG GGGESIVLRE LIGRLGSICN SGEISPQSRI NGNHSNNTSC  120
YDTPLSSPPQ LNLSITENQI PGDLPIPGNH QLPLSPFPTD PVFVERAARF SSFGGKNFGL  180
KETEFPHVVE SAKMSRVSSS QSFKNGSQFM GIPDDKDRIG VSDKKFSRLA MSSTQENIEF  240
GDSMEESSVS EQIPGGETGM KSQSTNTNGR KRKGIPKGKG KETPSSTIYA KDDKVVAELE  300
KEESNAKRSK SDEQEKGMEK GEGNQKQTKG NPKPSEPPKD YIHVRAKRGQ ATDSHSLAER  360
VRREKISERM KFLQDLVPGC NKVTGKAVML DEIINYVQAL QRQVEFLSMK LATVSPRMDA  420
TMEALLSKDL FRSRVSVPTS MNPFENSTQP FPYGFQSQNN GIVLDGSENQ FSMNPLMAAM  480
HRNSIVKPSP VDGFAEASTF WENDLQSVVK MALGQDQPQS FHGQMKVEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-79	bHLH family protein