PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024986556.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | WOX | ||||||||
Protein Properties | Length: 201aa MW: 22490.2 Da PI: 8.0988 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.3e-20 | 45 | 106 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L +lF++ r+p++++++ ++++l +++ ++V++WFqN++a+e++ XP_024986556.1 45 KCGRWNPTNEQVKVLTDLFRSgLRTPTTDQIQNISSQLsfygKIESKNVFYWFQNHKARERQ 106 568*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 112.9 | 1.7e-36 | 45 | 108 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+ XP_024986556.1 45 KCGRWNPTNEQVKVLTDLFRSGLRTPTTDQIQNISSQLSFYGKIESKNVFYWFQNHKARERQKR 108 578***********************************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence |
MDEGMSDFGL KLSPTKGGPP SPAPAPAPAP AGAGAGAGGA GAGAKCGRWN PTNEQVKVLT 60 DLFRSGLRTP TTDQIQNISS QLSFYGKIES KNVFYWFQNH KARERQKRRR VYVENLDQND 120 HHFNVSKQHF AEVLESGRVI ETLQLFPVNS LTFSDQPEKV RAYTNDECKE NASPFMYTCA 180 TEMENHYQHR HPSLDLRLSF M |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 111 | KRRRV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11260.1 | 6e-56 | WOX family protein |