PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986537.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 756aa MW: 87738.8 Da PI: 8.9357

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.5e-22	59	154	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA ++GF+vr +++k++ +ng i +r+fvC++eg+++++ + e++ r+++ +r+gC a++k++++k ++ +e++++++ HnH+ XP_024986537.1 59 KMYRAYADNAGFDVRLHAKKTN-KNGVIQTRWFVCNREGTPNKKFFDsmdiqsGERRYRNTNLKRCGCLACIKIHLKKdKSXYEIYEFVEAHNHA 152 68***********9987776.9999**********999888899987778888999***********9999************ PP FAR1 89 la 90 l+ XP_024986537.1 153 LF 154 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence
MLQDIIXSTG VPILTISEHE PEYDVEECSQ GNQFFIPKVD DELKPKINSH FLTINDAEKM 60 YRAYADNAGF DVRLHAKKTN KNGVIQTRWF VCNREGTPNK KFFDSMDIQS GERRYRNTNL 120 KRCGCLACIK IHLKKDKSXY EIYEFVEAHN HALFNTNDRR FSRKNRQMKY TDFKNVLNSS 180 SYKVGAIRAH RIQTALNGGF EHNRCSEIDF KNFKRDAVAC VGKKDAKMLI NKLSNRRDIV 240 PGYFFEYKCN DQELXAIFWA DEIARVNYKE FGDVISFDGT FRTNKHAMIF VPFLAVDNHK 300 ASVVVGSALI SGETIENFTW VLRAFLKCHE KQPVFVITDQ CSAMKQAVPL VFTEAKHRLC 360 MWHIMKKVPS KVSVALNQDX RFNKVINKLV WNIDIGPSEF ETKWQEMIEQ YNLGGDPWFT 420 EMYEIRASWI PAYYKDTPMS GLMKTTSRSE SSNSYINIYE SYWFDLVXFL NNYDVAIEKQ 480 RYKQAVHETI TRTTYPKLVT PLRLERQAAR VYSRNVFVDI QKELKKAVWF CGIENVECRG 540 DIKTFIISHK NKMKFVNTTY LVSRNYPANT VECECNLFKR NGYLCRHAFK VLINDEVESI 600 PDQYVLRRWK XNLVPVQIQS ARVRYGEVDA EKDKSIIDVY SKIDNIISIA RNDKSILNRL 660 EQNLDNFMVD IEKEVPYEDP SQQKLDAIRD HLGVSIPDDV DILPPSGIRN KGCGTGKRLV 720 SVSEKIQSGS KKTRRKCATC GQRTGHDSRN CPELIE

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence

MLQDIIXSTG VPILTISEHE PEYDVEECSQ GNQFFIPKVD DELKPKINSH FLTINDAEKM  60
YRAYADNAGF DVRLHAKKTN KNGVIQTRWF VCNREGTPNK KFFDSMDIQS GERRYRNTNL  120
KRCGCLACIK IHLKKDKSXY EIYEFVEAHN HALFNTNDRR FSRKNRQMKY TDFKNVLNSS  180
SYKVGAIRAH RIQTALNGGF EHNRCSEIDF KNFKRDAVAC VGKKDAKMLI NKLSNRRDIV  240
PGYFFEYKCN DQELXAIFWA DEIARVNYKE FGDVISFDGT FRTNKHAMIF VPFLAVDNHK  300
ASVVVGSALI SGETIENFTW VLRAFLKCHE KQPVFVITDQ CSAMKQAVPL VFTEAKHRLC  360
MWHIMKKVPS KVSVALNQDX RFNKVINKLV WNIDIGPSEF ETKWQEMIEQ YNLGGDPWFT  420
EMYEIRASWI PAYYKDTPMS GLMKTTSRSE SSNSYINIYE SYWFDLVXFL NNYDVAIEKQ  480
RYKQAVHETI TRTTYPKLVT PLRLERQAAR VYSRNVFVDI QKELKKAVWF CGIENVECRG  540
DIKTFIISHK NKMKFVNTTY LVSRNYPANT VECECNLFKR NGYLCRHAFK VLINDEVESI  600
PDQYVLRRWK XNLVPVQIQS ARVRYGEVDA EKDKSIIDVY SKIDNIISIA RNDKSILNRL  660
EQNLDNFMVD IEKEVPYEDP SQQKLDAIRD HLGVSIPDDV DILPPSGIRN KGCGTGKRLV  720
SVSEKIQSGS KKTRRKCATC GQRTGHDSRN CPELIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-68	FAR1 family protein