PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024986462.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 21285.5 Da PI: 8.9798 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122 | 3.3e-38 | 14 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+k+Cv+apyf ++q +++fa+vh++FGasn kll ++p+++r da+ sl+yeA r+rdPvyG+v+ i++lqqq+ +l+ae XP_024986462.1 14 PCGACKFLRRKCVKNCVFAPYFDSDQlgTSDFAAVHRVFGASNAAKLLLRIPPHRRLDAVVSLCYEALSRVRDPVYGCVANIFTLQQQVINLQAE 108 7***********************99666****************************************************************** PP DUF260 94 lallkee 100 la+++++ XP_024986462.1 109 LAYVRAR 115 **99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence |
MSCRHGGGGG GGGPCGACKF LRRKCVKNCV FAPYFDSDQL GTSDFAAVHR VFGASNAAKL 60 LLRIPPHRRL DAVVSLCYEA LSRVRDPVYG CVANIFTLQQ QVINLQAELA YVRARISTLQ 120 CHRQANLPST DILSSPKIMS SSTMSPVYSE LAKSVQTSRV IPKCSNDTPT GQELEESDLE 180 MIAREFLTKY VPRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 2e-56 | LBD family protein |