PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024986422.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | GATA | ||||||||
Protein Properties | Length: 171aa MW: 18202.9 Da PI: 10.3298 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.9 | 3.2e-19 | 39 | 73 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ XP_024986422.1 39 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 73 ********************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MGDLSDKGSE CDDMMNCKSS PERGGSSSSD GGSHTIKTCA DCGTTKTPLW RGGPAGPKSL 60 CNACGIRSRK KRRALLGISK DDKKAKKTMI TTTAPMTVTS TSGGDSQTSG LTTIKSSNMV 120 DFCLKRRLMA LGTEVVLQRP RSRVTKQRRK IGEEEQAAFL LMALSCGSVF A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 5e-32 | GATA family protein |