PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986399.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 327aa    MW: 38083.8 Da    PI: 6.7027
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.44.7e-5671361129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv++yL+kk+++k+++l +vik++d+y++ePwdL+   k+   e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk++
  XP_024986399.1   7 VPPGFRFHPTDEELVDYYLRKKIASKRIDL-DVIKDIDLYRIEPWDLQDlcKLGIeEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAI 100
                     69****************************.9***************943444443566************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +s k++lvg++ktLvfykgrap+g+k+dW+mheyrle
  XP_024986399.1 101 YS-KHNLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                     **.899*****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MNNFSHVPPG FRFHPTDEEL VDYYLRKKIA SKRIDLDVIK DIDLYRIEPW DLQDLCKLGI  60
EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSKHNLVGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNET GTTQEEGWVV CRVFKKRITT VRRMDEHDSL CWFDDQVSFM  180
PNFETPRRLS HPYTSGSSYH QQFPAKSELD QLHYNLPQDH SFLQLPQLES PKIQQPAAAF  240
QPSTQQLNIN LLYGSHGEHD LQVTDWRVLD KFVASQLSND QDPSNPPPSS LQMAEHMNLL  300
LSDSKSDEMA SECASISTST CQVDLWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-126NAC family protein