PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986358.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 366aa MW: 41623.6 Da PI: 6.7099

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986358.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d ++++G+g +W + +++ g++R++k+c++rw++yl XP_024986358.1 14 KGPWSPEEDAKLKDFIEKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.2	3.3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ XP_024986358.1 69 GEFSDDEDRIICSLYATIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MGRAPCCDKA SVKKGPWSPE EDAKLKDFIE KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIRHGE FSDDEDRIIC SLYATIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLLTM 120 LPSLQEKPTL FPSMPFQPPY DDHHHHTSDH FLTTSSSFYT NYTPNFMSVD TTSNSLLVQD 180 NDHVNVANLS SPPPPPPPEN HLISLLGNNT IDVNENSYNS YLGFQDDHQS MCNSPMQECY 240 HPVSAMKEGM LMFGGGATCS SSEGGSCMSQ ISHGNYNKDH HQKQQYQIKQ EDQITLQEQV 300 LGDQTQSLQG FIINQKPKEY MIKNHVSPLN NDLEEVKQLN FNSYMFHDGD ESKTTHYQKG 360 MCSYYY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MGRAPCCDKA SVKKGPWSPE EDAKLKDFIE KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIRHGE FSDDEDRIIC SLYATIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLLTM  120
LPSLQEKPTL FPSMPFQPPY DDHHHHTSDH FLTTSSSFYT NYTPNFMSVD TTSNSLLVQD  180
NDHVNVANLS SPPPPPPPEN HLISLLGNNT IDVNENSYNS YLGFQDDHQS MCNSPMQECY  240
HPVSAMKEGM LMFGGGATCS SSEGGSCMSQ ISHGNYNKDH HQKQQYQIKQ EDQITLQEQV  300
LGDQTQSLQG FIINQKPKEY MIKNHVSPLN NDLEEVKQLN FNSYMFHDGD ESKTTHYQKG  360
MCSYYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	9e-72	MYB family protein