PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986282.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 407aa MW: 45412 Da PI: 6.4168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	341	386	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq XP_024986282.1 341 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 386 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MDSDLHHHHQ QQQQLHQPQQ IMNSGLTRYR SAPSSYFSNL INSGIYGDDS DPFFNPRVSN 60 AETDQILSRF TSPGAAADST SHQIMNQIAG YEPQFMDSVK QEQEGIYSEP QQQQQQTMLY 120 QNQFQSQTDH DNPPVATCSS ILDDSLPSMN LPTNLLRQSS SPAGFFAHLD IDNGYSVMRS 180 MDDFGAGRAS VPDSLLSSTK RLKSELGFSS GSHSSSGILP RIPENDSKIM GVKSSRNDGG 240 FGETHSQDEG YVARFQSGSW DDSDILSDSF LKELGENDHK LSNLNSSRNQ NHGGRTRAPS 300 TLVHHMSLPT STAELDKLLQ FQDSVPLKSR AKRGCATHPR SIAERVRRTR ISERMRKLQE 360 LVPNMDKQTN TADMLDLAVD YIKDLQKEAE TLSDHHAKCT CPHKQKV

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MDSDLHHHHQ QQQQLHQPQQ IMNSGLTRYR SAPSSYFSNL INSGIYGDDS DPFFNPRVSN  60
AETDQILSRF TSPGAAADST SHQIMNQIAG YEPQFMDSVK QEQEGIYSEP QQQQQQTMLY  120
QNQFQSQTDH DNPPVATCSS ILDDSLPSMN LPTNLLRQSS SPAGFFAHLD IDNGYSVMRS  180
MDDFGAGRAS VPDSLLSSTK RLKSELGFSS GSHSSSGILP RIPENDSKIM GVKSSRNDGG  240
FGETHSQDEG YVARFQSGSW DDSDILSDSF LKELGENDHK LSNLNSSRNQ NHGGRTRAPS  300
TLVHHMSLPT STAELDKLLQ FQDSVPLKSR AKRGCATHPR SIAERVRRTR ISERMRKLQE  360
LVPNMDKQTN TADMLDLAVD YIKDLQKEAE TLSDHHAKCT CPHKQKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-59	bHLH family protein