PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986281.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 408aa    MW: 45540.2 Da    PI: 6.4168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986281.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12342387655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  XP_024986281.1 342 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 387
                     689*********************7....688*****************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    
MDSDLHHHHQ QQQQLHQPQQ IMNSGLTRYR SAPSSYFSNL INSGIYGDDS DPFFNPRVSN  60
AETDQILSRF TSPGAAADST SHQIMNQIAG YEPQFMDSVK QEQEGIYSEP QQQQQQTMLY  120
QNQFQSQTDH DNPPVATCSS ILDDSLPSMN LPTNLLRQSS SPAGFFAHLD IDNGYSVMRS  180
MDDFGAGRAS VPDSLLSSTK RLKSELGFSS GSHSSSGILP RIPENDSKIM GVKSSRNDGG  240
FGETHSQDEG YVARFQSGSW DDSDILSDSF LKELGENDHK LSNLNSSRNQ QNHGGRTRAP  300
STLVHHMSLP TSTAELDKLL QFQDSVPLKS RAKRGCATHP RSIAERVRRT RISERMRKLQ  360
ELVPNMDKQT NTADMLDLAV DYIKDLQKEA ETLSDHHAKC TCPHKQKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-56bHLH family protein