PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024986172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 22929 Da PI: 7.947 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.2 | 1.3e-38 | 14 | 115 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+C++ap+f ++q ++ fa+vhk+FGasnv+kll +lp + r++a+ ++ yeA+ar++dPvyG+v+++ +l+qq++ l+ael XP_024986172.1 14 PCGACKFLRRKCVKGCIFAPHFSSDQgAALFAAVHKVFGASNVSKLLMHLPVHWRNHAVVTISYEAQARLSDPVYGCVSTVVALKQQVAALQAEL 108 7*************************889****************************************************************** PP DUF260 95 allkeel 101 a+++++l XP_024986172.1 109 AMVQNQL 115 ***9986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence |
MAAPPESGST PTTPCGACKF LRRKCVKGCI FAPHFSSDQG AALFAAVHKV FGASNVSKLL 60 MHLPVHWRNH AVVTISYEAQ ARLSDPVYGC VSTVVALKQQ VAALQAELAM VQNQLINNRV 120 MAANALQGSL QQPQAVHHPR WLQPEYSNAS NNNMINMSSF QSSQNNLAGD HQTAVDLQPS 180 FDPLQFSRPY GENGEGSGDL LAFAEQMFHP R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03760.1 | 5e-51 | LBD family protein |