PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024986079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 27749.8 Da PI: 4.8474 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8e-20 | 143 | 193 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+++AeIrdp+++g r++lg+f+ta eAaka+++a+ +++g XP_024986079.1 143 RYRGIRRRP-WGKYAAEIRDPKQRG--SRVWLGTFDTAIEAAKAYDRAAFNMRG 193 7********.***********8876..*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MAMHDEFTTL DFIRQHLLDE CESESEIPSP PLHPLDSLSN IDLSDCFLSD FNSLDWSTSN 60 GYSPQSDPSS SGSSFFDSPL SVSSFFDATD VDNTCSFYQF RDSNSINFSE FESKPEVIDL 120 TVPELVESSP SSKMKQDTED ERRYRGIRRR PWGKYAAEIR DPKQRGSRVW LGTFDTAIEA 180 AKAYDRAAFN MRGRKAILNF PLEIGKNLTE NAVVSGGRKR RSRDMNEVEM GQNVVIKKEK 240 RIKI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 2e-31 | ERF family protein |