PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985991.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 407aa    MW: 46054.3 Da    PI: 5.9802
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.11.4e-56181481129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee++++yL++kv ++++++ ++i evd++k+ePwdLp+k+k +ekew+fF++rd+ky+tg r+nrat+sgyWkatgkdke+l+k
  XP_024985991.1  18 LPPGFRFHPTDEEIITHYLTPKVVNRSFTA-SAIGEVDLNKCEPWDLPRKAKMGEKEWFFFCQRDRKYPTGMRTNRATDSGYWKATGKDKEILKK 111
                     79*************************999.88***************99999*****************************************9 PP

             NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        +g+lvg+kktLvfykgrapkgekt+Wvmhe+rle
  XP_024985991.1 112 gksGGRLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 148
                     8777888***************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    
MEGGTMVVNE GDDALIGLPP GFRFHPTDEE IITHYLTPKV VNRSFTASAI GEVDLNKCEP  60
WDLPRKAKMG EKEWFFFCQR DRKYPTGMRT NRATDSGYWK ATGKDKEILK KGKSGGRLVG  120
MKKTLVFYKG RAPKGEKTNW VMHEFRLEGD FSYYNMSRAS KDEWVVCRVV QKNTEMKRNP  180
ISDSGMTRMN SFVDELLDSP PWLPPLMDPP APHFDPDRAG SSFTSSDKII TNNHTENSSV  240
QKFKGLVDHE NCPSYFSHDQ SQMLQRDQDY KNFLVSPYNY NFDTNSYQMS PFISDHQLST  300
HPNFASTLAN NFPYLSSPGS TRYMDQASGL EGEAEKVGGQ CKVEPYVTST NQSSKISVTS  360
QDTGVSNDIT TEISSSSKHD MSMRPYDHPD DQTTPSVLSE LDSLLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.16e-97NAC family protein