PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985985.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 684aa MW: 74988.7 Da PI: 5.1168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985985.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.2e-12	500	545	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_024985985.1 500 NHVEAERQRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAISYINEL 545 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MTDYRLPTTM NLWNTDDNAM MDAFMSSDMS SFWGNPTTAT TTAAPSAVPP ASSSASTSTN 60 DLHKIIGESH SFNQDTLQQR LQGLIDNARE SWTYAIFWQS SAVDYTSPSL LGWGDGYYKG 120 EMNKPKTTPS VTSFAEQEHR KKVLRELNSL ISGSKMPENE AVDEEVTDTE WFFLISMTQS 180 FVNGNGLPGQ AMFSNQPLWI AGRERLLAAH CDRARQGEGF GLQTIVCIPS TSGVVELGST 240 ELIFQSSDLM NEVRVLFNFN NSTPDLTAMN EDQAAGGDND PSSLWLTDPV SSSAATAATV 300 TTVEMKDSDD IIATVIPSNN SLPKQISIDN PSSSSLTENP SSAIHVSNRQ PLQNQGLFGS 360 RELIFSEFGS YDGTTGGRNG NSSNSCKPES VELLNFGESK KNSGQSPFIG GDDNGNKKKR 420 SPALRGINEE GMLSFSSGML LPTSETVKSG GGLITGADFD HSDLEPSMGR EAESRLVVEP 480 EKKPRKRGRK PANGREEPLN HVEAERQRRE KLNQKFYALR AVVPNVSKMD KASLLGDAIS 540 YINELKSKLQ ISETDKEELK NQLDVTKKEL LTKDSRQSSS STVSPPEDLK TATTNHPKMA 600 DLDIDVKIIG WDAMIRIQCS KKNHPAARLM AALKELDLDV HHASVSVVNE LMMQQATVKM 660 GSRFYTQDQL RLALTKRVSD PNLR

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MTDYRLPTTM NLWNTDDNAM MDAFMSSDMS SFWGNPTTAT TTAAPSAVPP ASSSASTSTN  60
DLHKIIGESH SFNQDTLQQR LQGLIDNARE SWTYAIFWQS SAVDYTSPSL LGWGDGYYKG  120
EMNKPKTTPS VTSFAEQEHR KKVLRELNSL ISGSKMPENE AVDEEVTDTE WFFLISMTQS  180
FVNGNGLPGQ AMFSNQPLWI AGRERLLAAH CDRARQGEGF GLQTIVCIPS TSGVVELGST  240
ELIFQSSDLM NEVRVLFNFN NSTPDLTAMN EDQAAGGDND PSSLWLTDPV SSSAATAATV  300
TTVEMKDSDD IIATVIPSNN SLPKQISIDN PSSSSLTENP SSAIHVSNRQ PLQNQGLFGS  360
RELIFSEFGS YDGTTGGRNG NSSNSCKPES VELLNFGESK KNSGQSPFIG GDDNGNKKKR  420
SPALRGINEE GMLSFSSGML LPTSETVKSG GGLITGADFD HSDLEPSMGR EAESRLVVEP  480
EKKPRKRGRK PANGREEPLN HVEAERQRRE KLNQKFYALR AVVPNVSKMD KASLLGDAIS  540
YINELKSKLQ ISETDKEELK NQLDVTKKEL LTKDSRQSSS STVSPPEDLK TATTNHPKMA  600
DLDIDVKIIG WDAMIRIQCS KKNHPAARLM AALKELDLDV HHASVSVVNE LMMQQATVKM  660
GSRFYTQDQL RLALTKRVSD PNLR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	482	490	KKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-173	bHLH family protein