PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985946.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 326aa    MW: 36961.8 Da    PI: 5.6462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.6e-182673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   XP_024985946.1 26 RGPWTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 73
                     89********************************************97 PP
2Myb_DNA-binding51.22.8e-1679122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_024985946.1  79 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 122
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MNSNNCLEMG GSEDDDQMSM MEDLRRGPWT VEEDFTLINY IAHHGEGRWN SLARCAGLKR  60
TGKSCRLRWL NYLRPDVRRG NITLEEQLLI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW  120
RTRVQKHAKQ LKCDVNSKQF KDTMRYLWMP RLVERIQAAA TTTATTGGSS SSTTTTTTTS  180
TATTTNSYPL NQSNNMDNIV TSQLVVPQGN NNNCGNICSN YGNAQITPSY TPENSSTTAV  240
SPVSDLTDCY YPANQSQNQD FFQHNNPIGG GFADTIISPS GYFNPGMDFQ AMVEQNNQWS  300
DGGNDDFSDN LWNVEDIWFL KQQFNM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-86MYB family protein