PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024985884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | ARR-B | ||||||||
Protein Properties | Length: 535aa MW: 60438.8 Da PI: 6.1046 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82 | 6.4e-26 | 297 | 350 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRl 55 +++Wt+eLH++Fv+aveqL G ++A+P++ilelm+v+gLt+++v+SHLQ kYRl XP_024985884.1 297 IKVDWTSELHKKFVQAVEQL-GVDQAIPSRILELMNVEGLTRHNVASHLQqKYRL 350 5899****************.****************************649**8 PP | |||||||
2 | Myb_DNA-binding | 39.2 | 1.7e-12 | 299 | 346 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqk 46 WT e+++++v+av+qlG + +++I + m+ +g+t+ ++ s++q+ XP_024985884.1 299 VDWTSELHKKFVQAVEQLGVDqaIPSRILELMNvEGLTRHNVASHLQQ 346 57********************************************96 PP | |||||||
3 | Response_reg | 23.5 | 2.8e-09 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d++ + + +r+ le+ gy +v + + eal + ++ +++ ++ ++ + d + +k +++++ +lp i+ ++ + +++ +++ +G XP_024985884.1 20 VLLLDEDIDSAAEIRSKLEEMGY-SVSMFFSENEALSAISDNSngFHVAIVEVRAENED--RRFKFLESAK-DLPTIMNSDVNCLSTMMKCIALG 110 7899999999999**********.999999999999999777779**********9977..4455555544.9********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl+Kp ++++l++ XP_024985884.1 111 AVEFLEKPLSEDKLRN 126 *************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence |
MVCTANDLLG WKDFPKGLRV LLLDEDIDSA AEIRSKLEEM GYSVSMFFSE NEALSAISDN 60 SNGFHVAIVE VRAENEDRRF KFLESAKDLP TIMNSDVNCL STMMKCIALG AVEFLEKPLS 120 EDKLRNIWQH VAHKAFAGLK DQSERLQSEK ALAASVLEVH MEQKDIKEEC NKNQEHNEEV 180 SVESDKYPAP STPQLKQGIR LVDNGDCQDQ DQDQTNRSPE KECVDHDGES KFVETTCDNL 240 VVETTIEMNS AKSLEEGIDK PANDECGLDS KNDGKKRNEA SEHRSNSRGT KSSRRKIKVD 300 WTSELHKKFV QAVEQLGVDQ AIPSRILELM NVEGLTRHNV ASHLQQKYRL QRRHILPKES 360 GRKWPQTRHS TPRSYYPQKP IVAYPPYHSN HALSGSQVYP AWPPPHSYPP PPQMWGSPYY 420 PAWQSSESWM WNPYSGVQAD AWGCPTVPPQ PTFPQNVSQF QGRDSMQSSQ SIPKPSSDHF 480 PGDEVIDKVV KEAINKPWLP LPLGLKPPST ESVIYELSKQ GISTVPPRIN GSRQR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.3 | 1e-114 | ARR-B family protein |