PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985846.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 332aa    MW: 37563 Da    PI: 5.8864
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-152976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
   XP_024985846.1 29 KGLWSPEEDEKLMNYMITNGQGCWSDIARNAGLQRCGKSCRLRWINYL 76
                     678*******************************************97 PP
2Myb_DNA-binding50.64.5e-1682125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+ +++ +lG++ W+ Ia++++ gRt++++k++w++
   XP_024985846.1  82 RGAFSPQEEELIMHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 125
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MRKPIGGENH KINSISNGNG TMIAAKMRKG LWSPEEDEKL MNYMITNGQG CWSDIARNAG  60
LQRCGKSCRL RWINYLRPDL KRGAFSPQEE ELIMHLHSLL GNRWSQIAAR LPGRTDNEIK  120
NFWNSTIKKR LKNSSSNSSS PNTSHDSSSS EHRDIMGGLM SMHDSSSIMA MYMDATRRSS  180
SSSSIQAMTM NHMMEQFPLN DDHHDQNMPM HASCYGTTQH CMTGMDDNGI SYHGCYEIFG  240
GNLGLEDEIF NIPPLDNIAN NNQDMKSELD DRNTMIMTNN IIMNQCYNNN KHKVQAIAAG  300
FENCWEGGDD LKAEEWDLEE LMREASSFPS LD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.15e-69MYB family protein