PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985837.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TALE

Protein Properties

Length: 456aa MW: 50780 Da PI: 6.4756

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.5	1.9e-07	397	430	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + XP_024985837.1 397 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 430 569*****************************87 PP
2	ELK	28.7	3e-10	351	372	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_024985837.1 351 ELKHELKQGYKEKIVDIREEIL 372 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MAFHPNHLSQ EMALQQHFSD TDNNSVLRTI LPDHHHHHLA VAAQSSPSSR SVGKDHWLNS 60 AILRQQNQYG AGAADGGNNF LNLQTNNNSE SAITTSSQLH HQQHTGNNNN QWLSRSMMQR 120 NVSDVRGDDI VSQVSNDSII AAMSSHDSPD LNNQSRSVVA SQVDNNGGES EVGGGEGALV 180 NWQNARHKAE VLSHPLYEQL LSAHVACLRI ATPVDQLPRI DAQLAQSQHV VSKYSALGGH 240 ANLGDDKELD QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SLTGVSPGEG 300 TGATMSDDDE DQVESDANLF DGSLDGHDSM GFGPLVPTES ERSLMERVRQ ELKHELKQGY 360 KEKIVDIREE ILRKRRAGKL PGDTTSVLKS WWQSHAKWPY PTEEDKARLV QETGLQLKQI 420 NNWFINQRKR NWHTNPSSSS SSTVLKTKRK RSNAGE

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MAFHPNHLSQ EMALQQHFSD TDNNSVLRTI LPDHHHHHLA VAAQSSPSSR SVGKDHWLNS  60
AILRQQNQYG AGAADGGNNF LNLQTNNNSE SAITTSSQLH HQQHTGNNNN QWLSRSMMQR  120
NVSDVRGDDI VSQVSNDSII AAMSSHDSPD LNNQSRSVVA SQVDNNGGES EVGGGEGALV  180
NWQNARHKAE VLSHPLYEQL LSAHVACLRI ATPVDQLPRI DAQLAQSQHV VSKYSALGGH  240
ANLGDDKELD QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SLTGVSPGEG  300
TGATMSDDDE DQVESDANLF DGSLDGHDSM GFGPLVPTES ERSLMERVRQ ELKHELKQGY  360
KEKIVDIREE ILRKRRAGKL PGDTTSVLKS WWQSHAKWPY PTEEDKARLV QETGLQLKQI  420
NNWFINQRKR NWHTNPSSSS SSTVLKTKRK RSNAGE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.1	0.0	TALE family protein