PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985647.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 846aa    MW: 93011.1 Da    PI: 6.2976
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-182886357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_024985647.1 28 KYVRYTTEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 86
                    5679*****************************************************97 PP
2bZIP_120.97.8e-07801251863
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     rr+R++ ++e  +L++  k+L+a Nk L +e+++l+k+v++l +e+
  XP_024985647.1  80 RRCREKQRKESSRLQTVNKKLSAMNKLLMEENDRLQKQVSQLVNEN 125
                     9****************************************98876 PP
3START158.35.9e-501663732204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++++ ve+l d++  W +++++ e++     g  g+++l 
  XP_024985647.1 166 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIVEILKDRP-SWFRDCRSLEVYTMFPAGngGTIELV 259
                     7899******************************************************9999999999.**************999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++  a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+     ++vR+e+lpSg+li+p+++g+s +++v+h +l+ ++++++lr+l+
  XP_024985647.1 260 YTQIFAPTTLAPaRDFWTLRYTTSLENGSLVVCERSLTGSGAGPNaaaANQFVRGEMLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVLRPLY 354
                     **************************************999999989999********************************************* PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++ a+l++ +
  XP_024985647.1 355 ESSKVVAQKMTIAALRYIR 373
                     **************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    
MAMVVQHQQH KEISSNNSIT KHQLDNGKYV RYTTEQVEAL ERVYAECPKP SSLRRQQLIR  60
ECPILSNIEP KQIKVWFQNR RCREKQRKES SRLQTVNKKL SAMNKLLMEE NDRLQKQVSQ  120
LVNENGYMRQ QLHTGSAGTD ASCESVVTTP QHSMRDANNP AGLLSIAEET LAEFLSKATG  180
TAVDWVQMPG MKPGPDSVGI FAISQSCSGV AARACGLVSL EPTKIVEILK DRPSWFRDCR  240
SLEVYTMFPA GNGGTIELVY TQIFAPTTLA PARDFWTLRY TTSLENGSLV VCERSLTGSG  300
AGPNAAAANQ FVRGEMLPSG YLIRPCDGGG SIIHIVDHLN LEPWSVPEVL RPLYESSKVV  360
AQKMTIAALR YIRQIAQESS GEVVYGLGRQ PAVLRTLSQR LSRGFNDAIN GFSDDGWSLM  420
NCDGAEDVII AVNSTKNLNN SMNPSNSLSF LGGILCAKAS MLFQNVPPAV LVRFLREHRS  480
EWADFNVDAY SAASVKANPY AYPGMRPTRF TGSQIIMPLG HTIEHEEMLE VVRLEGHALG  540
QEDPFMSRDI HLLQLCSGID ENAVGACSEL VFAPIDEMFP DDAPLVPSGF RIIPLDPKSN  600
DVKNALATPH RTLDLTSSLD VSPATNHGST DMTMCQNTRS VLTIAFQFPF ENNLAESVAT  660
MARQYVRSVI NSVQRVAMAI SPSGLSPSMG PKSSPGSPEA LTLAQWICQS YTYHLGTDLL  720
SSGSIVGDSL LKDLWQHQDA ILCCSLKSLP VFLFANQAGL DMLETTLVAL QDITLDKMFD  780
DSGRKALVPE FAKIMQQGFT HLPGGICLST MGRHISYEQA IAWKVLAADE STVHCLAFSF  840
VNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein