PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985598.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 329aa    MW: 37176.2 Da    PI: 6.3967
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985598.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.24e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ l d+++++G ++W++ ++  g++R++k+c++rw +yl
   XP_024985598.1 15 KGPWTPEEDQVLTDYIQKHGHNSWRALPKLAGLNRCGKSCRLRWINYL 62
                     79********************************************97 PP
2Myb_DNA-binding47.15.7e-1568111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ l+++++  lG++ W++Ia+ ++ gRt++++k++w++
   XP_024985598.1  68 RGKFSEDEENLIINLHCALGNK-WSRIASQLP-GRTDNEIKNFWNT 111
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MGRPPCCSEN GDLKKGPWTP EEDQVLTDYI QKHGHNSWRA LPKLAGLNRC GKSCRLRWIN  60
YLRPDIKRGK FSEDEENLII NLHCALGNKW SRIASQLPGR TDNEIKNFWN TCVRKKLLKA  120
GIDPKTHKPV PNFSFLMNVI SQLTSTSSNF LIKVPTIMSP WINNSLRYPS NATDQLTNIN  180
DQLLHNILEI VNTTPLPNAL KSAFLDSQRS FNQHDDQLLI DEMINQFGMN PSEDWLQNLN  240
KIALEPLSEC NSIGASLMES FGDGIGAAET FTDHKILSDN FFIDQNQLPS LLSVSPGEPT  300
NNKVSIKNSP EFNVFQAGLD DYYDSLMKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-73MYB family protein