PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985566.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 197aa    MW: 22346.4 Da    PI: 8.8291
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985566.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-17754148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEdell  ++k+ G g+W+t + + g+ R++k+c++rw +yl
   XP_024985566.1  7 KGPWTPEEDELLSTYIKKEGEGRWRTLPDKAGLLRCGKSCRLRWMNYL 54
                     79******************************99************97 PP
2Myb_DNA-binding49.41.1e-1560104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  +++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ 
   XP_024985566.1  60 RGHISPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNDIKNYWNTC 104
                      67779*****************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MRGMKKKGPW TPEEDELLST YIKKEGEGRW RTLPDKAGLL RCGKSCRLRW MNYLRPSLKR  60
GHISPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNDIKNY WNTCLSKKLI SRGIDPRTHK  120
PLSSSLAPDR KNICLSSPEE ISPENRSSSS TANDQICSPD DAFSSFLDSL INEEMCSEIT  180
AARPADASKN QHVVLEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-72MYB family protein