PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985513.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92502.1 Da    PI: 6.3322
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181977357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_024985513.1 19 KYVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                    5679*****************************************************97 PP
2START180.11.3e-561633712205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+++g  g+++l 
  XP_024985513.1 163 IAEETLTEFISKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLTTGtnGTIELL 256
                     789*******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  +++g++vi+++S++++q+ p+    +++vRa++lpSg+li+p+++g+s +++v+h+dl+++ ++++lr+l+
  XP_024985513.1 257 YMQLYAPTTLAPaRDFWLLRYTSAMEDGSLVICERSLNHTQNGPSmppVPHFVRAKMLPSGYLIRPCDGGGSIIHIVDHFDLESARVPEVLRPLY 351
                     *******************************************999999********************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++  +++t++a+l+++++
  XP_024985513.1 352 ESSTLLAQRTTMAALRQLRQ 371
                     ****************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    
MMAVSSACKG DTMGMDNGKY VRYTPEQVEA LERLYHDCPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE SSRLQAVNKK LSAMNKLLME ENDRLQKQVS NLVYSNGYFR  120
HQSQPAVATT DTSCESVVTS GQHHLTPQHP PRDAATPAGL LSIAEETLTE FISKATGTAV  180
EWVQMPGMKP GPDSIGIIAI SHGCTGVASR ACGLVGLEPT RVAEILKDRP SWFRDCRAVD  240
VLNVLTTGTN GTIELLYMQL YAPTTLAPAR DFWLLRYTSA MEDGSLVICE RSLNHTQNGP  300
SMPPVPHFVR AKMLPSGYLI RPCDGGGSII HIVDHFDLES ARVPEVLRPL YESSTLLAQR  360
TTMAALRQLR QISQEISQPM AVSWGRRPAA LRAIGQRMSK GFNEAINGFT DEGWSLMESD  420
GLDDITVLIN SSPDKVMGAT PMYADGFPSI SNGVLCAKAS MLLQNVPPAI LTRFLREHRS  480
EWADSSIDGY LAASVKAGPC GLPLARSGNF GGQVILPLAH TIEHEEFMEV IKLENMSNYR  540
AEDMLVPGDI FFLQLCSGVD EKAIGTSAEL IFAPIDASFT DNAPLLPSGF RIIPIDNTAI  600
YPSQNPTRDL ASALEVGPLV NRASADYLGQ RGPTKSVMTI AFQFAFESHL QENIAAMARE  660
YVRSIISSVQ RVALALSPSP FGPRNLQAPS GTPEAQMLAR WICHSFRCFL GEELFKTVDE  720
RSDSMLKTLW HHSDAIMCCS LKAVPDFTFA NQAGLDMLET TLVSLQDITV DKILDGGGRT  780
NVCSELPQIL QQGFACLPGG ICLTSMGRPV SYERAIAWKV LNDEEIPHCI AFVFVNWSFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0HD-ZIP family protein