PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985371.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 262aa MW: 29768.8 Da PI: 6.6003

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985371.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	105.2	3.5e-33	46	152	1	100
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k ltpsdv+k++rlv+pk++ae++ +++++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++dg + XP_024985371.1 46 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggdAADQQKDLLLSFEDESGKLWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERDGLD 140 99**************************988445567889*********************************************9988 PP EE..EEEEE-SS CS B3 89 efelvvkvfrks 100 +++++++++r+s XP_024985371.1 141 CEKMFIGWRRRS 152 *********985 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
METPHQPPSS TVDFNLNHHH FVNNHLETIT PDHHHHHPHF AKQPMFEKPL TPSDVGKLNR 60 LVIPKQHAEK YFPLGGGDAA DQQKDLLLSF EDESGKLWRF RYSYWNSSQS YVLTKGWSRY 120 VKEKRLDAGD VVLFERDGLD CEKMFIGWRR RSAQPVALGG AQVSGWSTAV FHDAHSNYPS 180 HPSLPLPYQP ESPHAGGIYE NVNNCQRGAV ATRRLRLFGV NLECPDNSEP STPDGSSQSG 240 RPDHQYSYNS SDFHLNMEEE EG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	2e-64	B3 family protein