PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985332.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 502aa    MW: 54876.8 Da    PI: 4.9664
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1522.9e-4761331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l pGfrFhPtd elv++yLk+k+ gkk+++ ++++ev+iy++ PwdLp + ++k+++ ew+fF+++++ky +g+r+nrat++g+Wkatg++++v+
  XP_024985332.1   6 LIPGFRFHPTDVELVMYYLKRKLLGKKINT-NAVAEVNIYDFCPWDLPdMsSLKSGDLEWFFFCPKARKYLNGSRSNRATETGFWKATGRERPVT 99 
                     579**************************9.89**************96347777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++v + ktLvf+ g+ap+g++tdWvmhey +
  XP_024985332.1 100 Y-RERTVAMIKTLVFHLGNAPNGKRTDWVMHEYCM 133
                     *.9999***************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    
MTSSSLIPGF RFHPTDVELV MYYLKRKLLG KKINTNAVAE VNIYDFCPWD LPDMSSLKSG  60
DLEWFFFCPK ARKYLNGSRS NRATETGFWK ATGRERPVTY RERTVAMIKT LVFHLGNAPN  120
GKRTDWVMHE YCMKDGHLDN GGIVQDAYVL CKIFQKSGAG PKNGAQYGKP FNEDEYDDDD  180
VAICSEPQAV IGPDGTTNTL NHKQKGPATM TLTEPGSSTV TFSANETTNT SNHKQKGPAI  240
MNTAEPGSSM VTFSANETTN ARNHKQKGPA TMNTSEPGSS TVTFSANGAT NAWNHKQMGP  300
AIMNTTEPGS SIGTFSANET RNARDHKQKG PATMNTTEPG SSTVTFSANG ATNAWNHKQK  360
GPATMDMIVP QRTCSLIQPG PSTFMFSANK RCADVPANDD VLFLEDMDLF MRESSTDDDD  420
DGLFSEDVAS IMGVSTEDVN GNNKKEGFEK GKSVAANDEN GIYDNLDDLC NLDDLAFKTD  480
AAEHTLGTST LTVDDLRDFY VD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.37e-79NAC family protein