PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985259.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 627aa MW: 70547.9 Da PI: 6.45

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	42.7	1.5e-13	26	57	46	77
TSSEEETTT--SS--S-STTTT-------S-- CS SBP 46 CsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C rfh l +fDe+krsCrr+L++hn+rrr+k XP_024985259.1 26 CCRFHVLLDFDEGKRSCRRKLERHNNRRRRKP 57 ***************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
MKILVSGDKS MLYLFHINYM LTNSPCCRFH VLLDFDEGKR SCRRKLERHN NRRRRKPSDS 60 KASGLQSADY DDGYDEAGKG AKCTSSEAAG EKLFLAAEGH NTIPSSTQAQ NIYSDSIPSL 120 AASGETQTDE EKEKGVPSPS YCDDRSAFSS VCPTGRISFK LYDWNPAEFP RRLRHQIFQW 180 LASMPVELEG YIRPGCVILT LFIAMPRFMW VKLSEDPVAC ILDLLASPSN LLSGRDTFFV 240 NLNGNIFSVM KGGRSVIKIK AGERSPKLHC VQPTCFEAGK PIEFLACGSN LLQPRLRFLV 300 SFAGKYMTND VHVSPSCNKN EASTTNFDHQ LLNIRVPGTE LDVFGPGFIE VENESGLSNF 360 IPILIADEEV CTEIKIMQMK YYSILHSRDS ESTATTVSCE VAVFRQNEFS ELLLDMAWLL 420 KQPVVEEMEY AMMSLQLQRF RCVLNFLIEY ESTTVLKRVL HCVKTRIIKS DDIIEADWTL 480 LQGTVNHATE VLCQRLEKKL NLGLHPRDFS SEENDESCRY QVLPSTPTIN QDMEVVADNT 540 PIPTLGQKSE NVPLLQADCI MSVTPCKEQS EKRSNHMFTY NTNRLFSSHP LILAVALVTL 600 CFGICAVVLH PQKSTAIAIT IRRCLFD

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

MKILVSGDKS MLYLFHINYM LTNSPCCRFH VLLDFDEGKR SCRRKLERHN NRRRRKPSDS  60
KASGLQSADY DDGYDEAGKG AKCTSSEAAG EKLFLAAEGH NTIPSSTQAQ NIYSDSIPSL  120
AASGETQTDE EKEKGVPSPS YCDDRSAFSS VCPTGRISFK LYDWNPAEFP RRLRHQIFQW  180
LASMPVELEG YIRPGCVILT LFIAMPRFMW VKLSEDPVAC ILDLLASPSN LLSGRDTFFV  240
NLNGNIFSVM KGGRSVIKIK AGERSPKLHC VQPTCFEAGK PIEFLACGSN LLQPRLRFLV  300
SFAGKYMTND VHVSPSCNKN EASTTNFDHQ LLNIRVPGTE LDVFGPGFIE VENESGLSNF  360
IPILIADEEV CTEIKIMQMK YYSILHSRDS ESTATTVSCE VAVFRQNEFS ELLLDMAWLL  420
KQPVVEEMEY AMMSLQLQRF RCVLNFLIEY ESTTVLKRVL HCVKTRIIKS DDIIEADWTL  480
LQGTVNHATE VLCQRLEKKL NLGLHPRDFS SEENDESCRY QVLPSTPTIN QDMEVVADNT  540
PIPTLGQKSE NVPLLQADCI MSVTPCKEQS EKRSNHMFTY NTNRLFSSHP LILAVALVTL  600
CFGICAVVLH PQKSTAIAIT IRRCLFD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	55	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	1e-140	SBP family protein