PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024985258.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 780aa MW: 87506.8 Da PI: 6.3148

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024985258.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	115.9	2.2e-36	134	210	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+d+se+k yh+rh+vC +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k XP_024985258.1 134 RCQVPGCEVDISELKGYHKRHRVCLRCANATTVVLDGHNKRYCQQCGKFHVLLDFDEGKRSCRRKLERHNNRRRRKP 210 6***********************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence
MRNPPPTSPP PPPPPAFNMD FIDESSTSIW DWNQLLDFNI DDHLPLPTDH SPLIPISPEL 60 HPIDNSHVEP VPDSNTNDRV RKRDPRMACS NFLAGRIPCA CPELDAQLLA EEEETAPGKK 120 RSRTITARTV ASSRCQVPGC EVDISELKGY HKRHRVCLRC ANATTVVLDG HNKRYCQQCG 180 KFHVLLDFDE GKRSCRRKLE RHNNRRRRKP SDSKASGLQS ADYDDGYDEA GKGAKCTSSE 240 AAGEKLFLAA EGHNTIPSST QAQNIYSDSI PSLAASGETQ TDEEKEKGVP SPSYCDDRSA 300 FSSVCPTGRI SFKLYDWNPA EFPRRLRHQI FQWLASMPVE LEGYIRPGCV ILTLFIAMPR 360 FMWVKLSEDP VACILDLLAS PSNLLSGRDT FFVNLNGNIF SVMKGGRSVI KIKAGERSPK 420 LHCVQPTCFE AGKPIEFLAC GSNLLQPRLR FLVSFAGKYM TNDVHVSPSC NKNEASTTNF 480 DHQLLNIRVP GTELDVFGPG FIEVENESGL SNFIPILIAD EEVCTEIKIM QMKYYSILHS 540 RDSESTATTV SCEVAVFRQN EFSELLLDMA WLLKQPVVEE MEYAMMSLQL QRFRCVLNFL 600 IEYESTTVLK RVLHCVKTRI IKSDDIIEAD WTLLQGTVNH ATEVLCQRLE KKLNLGLHPR 660 DFSSEENDES CRYQVLPSTP TINQDMEVVA DNTPIPTLGQ KSENVPLLQA DCIMSVTPCK 720 EQSEKRSNHM FTYNTNRLFS SHPLILAVAL VTLCFGICAV VLHPQKSTAI AITIRRCLFD

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence

MRNPPPTSPP PPPPPAFNMD FIDESSTSIW DWNQLLDFNI DDHLPLPTDH SPLIPISPEL  60
HPIDNSHVEP VPDSNTNDRV RKRDPRMACS NFLAGRIPCA CPELDAQLLA EEEETAPGKK  120
RSRTITARTV ASSRCQVPGC EVDISELKGY HKRHRVCLRC ANATTVVLDG HNKRYCQQCG  180
KFHVLLDFDE GKRSCRRKLE RHNNRRRRKP SDSKASGLQS ADYDDGYDEA GKGAKCTSSE  240
AAGEKLFLAA EGHNTIPSST QAQNIYSDSI PSLAASGETQ TDEEKEKGVP SPSYCDDRSA  300
FSSVCPTGRI SFKLYDWNPA EFPRRLRHQI FQWLASMPVE LEGYIRPGCV ILTLFIAMPR  360
FMWVKLSEDP VACILDLLAS PSNLLSGRDT FFVNLNGNIF SVMKGGRSVI KIKAGERSPK  420
LHCVQPTCFE AGKPIEFLAC GSNLLQPRLR FLVSFAGKYM TNDVHVSPSC NKNEASTTNF  480
DHQLLNIRVP GTELDVFGPG FIEVENESGL SNFIPILIAD EEVCTEIKIM QMKYYSILHS  540
RDSESTATTV SCEVAVFRQN EFSELLLDMA WLLKQPVVEE MEYAMMSLQL QRFRCVLNFL  600
IEYESTTVLK RVLHCVKTRI IKSDDIIEAD WTLLQGTVNH ATEVLCQRLE KKLNLGLHPR  660
DFSSEENDES CRYQVLPSTP TINQDMEVVA DNTPIPTLGQ KSENVPLLQA DCIMSVTPCK  720
EQSEKRSNHM FTYNTNRLFS SHPLILAVAL VTLCFGICAV VLHPQKSTAI AITIRRCLFD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	208	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein