PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985224.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 619aa    MW: 69638.6 Da    PI: 6.5555
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985224.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.11.9e-24128228198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kvlt sd++++g +++ +k+a+e+     + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  XP_024985224.1 128 FCKVLTASDTSTHGGFSVLRKHANEClpildMAQPTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENG 220
                     99*****************************667777789************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_024985224.1 221 ELRVGVRR 228
                     9*****98 PP
2Auxin_resp1003.2e-33254333183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st+s F v+Y+Pr+  s+F++ ++k+ +++++ ++vGmRf m+fe+eds+err++Gt++gv+dl+  +W+ SkWrsLk
  XP_024985224.1 254 ASHAVSTQSRFVVYYKPRT--SQFIIGLNKYIESINNGFTVGMRFNMRFEGEDSPERRFTGTIIGVEDLSH-QWECSKWRSLK 333
                     789***************6..9**********************************************766.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    
MYLSTMDNRG STVFSSEAME DLLYKELWKA CAGPLVDVPR DGERVFYFPQ GHMEQLEAST  60
NQESDQSIPR FDLNSKILCS VVHTQLLAEQ DTDEVYAQIT LLPEPDQSDP ASPDKCLADP  120
PRPTVHSFCK VLTASDTSTH GGFSVLRKHA NECLPILDMA QPTPTQELVA KDLHGFEWRF  180
KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD SFVFLRGENG ELRVGVRRVA QQHNSMPSSV  240
ISSRSMRLGM LATASHAVST QSRFVVYYKP RTSQFIIGLN KYIESINNGF TVGMRFNMRF  300
EGEDSPERRF TGTIIGVEDL SHQWECSKWR SLKVQWDEST SITRPERVSP WEIEAYTTPV  360
PTSLVQPVAP KSKRPRPSVN IPNLEPACST VSAVWNPSHE QTENGETEER KGLLGWSVHS  420
HSNYAPLESA KLTKDSIKSS HDLKKSENIL SCRLFGFDLK IAPKGDIPKV APSFERHESD  480
GISDQKPDHP SKDHKGGQSK QSALSRSRTK VQMQGVAVGR AVDLTVLKGY HELIDELEEM  540
FEIKGKLRPR NEWEIVFTDD EGDMMLMGDD PWQEFCRMVK RILICSSQDV KKMSCGSKLQ  600
LSSSIDNEVS GFSLEAAEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373377KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0ARF family protein