PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024985141.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 332aa    MW: 38190 Da    PI: 6.1204
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024985141.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.46.8e-50121391128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+ +yL+kkv++++l++ ++++e+++yk++Pw+Lp+k+  +e+ew+fF++rd+ky++g r+nr++  gyWkatg+d+++l +
  XP_024985141.1  12 LPPGFRFHPTDEELIIHYLQKKVTSTTLPA-SIFAEIELYKFNPWELPHKALFGEDEWFFFTPRDRKYPNGVRPNRMAGYGYWKATGTDRPILGS 105
                     79****************************.88***************87778999*************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vg+kk Lvfykgr p+g ktdW+mheyrl
  XP_024985141.1 106 sGENIVGVKKALVFYKGRPPRGDKTDWIMHEYRL 139
                     57778***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MENSTSNLNI QLPPGFRFHP TDEELIIHYL QKKVTSTTLP ASIFAEIELY KFNPWELPHK  60
ALFGEDEWFF FTPRDRKYPN GVRPNRMAGY GYWKATGTDR PILGSSGENI VGVKKALVFY  120
KGRPPRGDKT DWIMHEYRLL DTLACDSKKP KESMRLDDWV LCRVRKKTST PRNFCEDRYG  180
QSIPEPEKST ISSMVTNLDL EILEGETLFK DCPMLPFIFD SHLYFSSMDA KFSTISFAGS  240
KNSSDSSENG GNFQELFASV EGFVSRDRRH NKMNQEEDFI SPNKKLRTME GRNEDVGSLK  300
IDTNEMSFNG GDQSDLWAYM MASHDLNHLT FT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-79NAC family protein