PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984874.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 855aa MW: 97288.8 Da PI: 5.9193

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.7	7e-17	166	251	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA GF++ +++ +ks+ +g+i+ +t+ Cs++gk+ ++k + ++++ +t+Cka+++++ ++dgk +++ + +eHnHel+ XP_024984874.1 166 EFYGKYAAGKGFDIITRS-TKSDVEGKIKYYTLACSRSGKAVCTRKC---HLLSKSVVKTNCKARINIRTSRDGKLYLSGFTSEHNHELS 251 6**********98775.66679999***********99888...889999******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence
MNKMYQSTTW LHYSGTNCDD ETWFPNASVH LFWKLFPPKT TCITLTLALL NGWWSPRTFS 60 MINLENPWEI LDGFIKVRRS PWINQSALPL IQHNLPSEMV NINEFPSDGT MNSNGSDRSN 120 FRTPIIRNEM ENEDRVLYSG NTLAGDGEAE IPVIGMTFNS FEEVREFYGK YAAGKGFDII 180 TRSTKSDVEG KIKYYTLACS RSGKAVCTRK CHLLSKSVVK TNCKARINIR TSRDGKLYLS 240 GFTSEHNHEL SHGNSSCNTC TTSLGPHLER LVEYDDQVET QVNNNFQLLA SNENLHSRNE 300 EIINYIARSG SLRLGEGDIE SIFDYFVHMQ KQDTNFFYVS NMNEECCLRN VFWADGRSQA 360 LYESFGDVVA FESTYLNSDY KLPLVSIVGV NHHGQLILLG CGILFDDDKE SYMWLFRSWL 420 KCVCGRPPKA IVTNQCPSVQ AAVSEVFPET RNRLCLQDIM RTISLELCGL TNYLAIKNAL 480 ESSVLESCTI EEFEESWNLF IKELKLENND RLRTLYLDRA KWVPAFLKTT FWAGLSSANE 540 QNENVNGFFD GHILPETTLK QFMDQFNAML RSKIEKEEHA DSISSSFVIP TITDFPLEKQ 600 FQDAYTNEMF KLFQEELIGL IYCNASLVSS EGPKLTFEVK DHARMKDGSR RKVVYEVIFD 660 DASCNVWCKC CLFESQGILC RHAVAVLVDQ DVNEVPSCYI LSRWRKDVNR MHKGVSSCNE 720 VLKSNEQMVC LGKLRTACHS IVEIGAETEE GFELALNLLD EVKERMFEHK SESSRNNEEP 780 SGSSAKDGEA AKHYGEELQR SLVVRRRGRP PTKKKKVHFS PDTWTNNPSA RNNSNGQNLR 840 GNADTLTFNA SFGGS

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence

MNKMYQSTTW LHYSGTNCDD ETWFPNASVH LFWKLFPPKT TCITLTLALL NGWWSPRTFS  60
MINLENPWEI LDGFIKVRRS PWINQSALPL IQHNLPSEMV NINEFPSDGT MNSNGSDRSN  120
FRTPIIRNEM ENEDRVLYSG NTLAGDGEAE IPVIGMTFNS FEEVREFYGK YAAGKGFDII  180
TRSTKSDVEG KIKYYTLACS RSGKAVCTRK CHLLSKSVVK TNCKARINIR TSRDGKLYLS  240
GFTSEHNHEL SHGNSSCNTC TTSLGPHLER LVEYDDQVET QVNNNFQLLA SNENLHSRNE  300
EIINYIARSG SLRLGEGDIE SIFDYFVHMQ KQDTNFFYVS NMNEECCLRN VFWADGRSQA  360
LYESFGDVVA FESTYLNSDY KLPLVSIVGV NHHGQLILLG CGILFDDDKE SYMWLFRSWL  420
KCVCGRPPKA IVTNQCPSVQ AAVSEVFPET RNRLCLQDIM RTISLELCGL TNYLAIKNAL  480
ESSVLESCTI EEFEESWNLF IKELKLENND RLRTLYLDRA KWVPAFLKTT FWAGLSSANE  540
QNENVNGFFD GHILPETTLK QFMDQFNAML RSKIEKEEHA DSISSSFVIP TITDFPLEKQ  600
FQDAYTNEMF KLFQEELIGL IYCNASLVSS EGPKLTFEVK DHARMKDGSR RKVVYEVIFD  660
DASCNVWCKC CLFESQGILC RHAVAVLVDQ DVNEVPSCYI LSRWRKDVNR MHKGVSSCNE  720
VLKSNEQMVC LGKLRTACHS IVEIGAETEE GFELALNLLD EVKERMFEHK SESSRNNEEP  780
SGSSAKDGEA AKHYGEELQR SLVVRRRGRP PTKKKKVHFS PDTWTNNPSA RNNSNGQNLR  840
GNADTLTFNA SFGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-107	FAR1 family protein