PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984873.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 862aa MW: 98115.8 Da PI: 5.8339

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.7	7.1e-17	173	258	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA GF++ +++ +ks+ +g+i+ +t+ Cs++gk+ ++k + ++++ +t+Cka+++++ ++dgk +++ + +eHnHel+ XP_024984873.1 173 EFYGKYAAGKGFDIITRS-TKSDVEGKIKYYTLACSRSGKAVCTRKC---HLLSKSVVKTNCKARINIRTSRDGKLYLSGFTSEHNHELS 258 6**********98775.66679999***********99888...889999******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence
MNKMYQSTTW LHYSGTNCDD ETWFPNASVH LFWKLFPPKT TCITLTLALL NGWWSPRTFS 60 MINLENPWEI LDGFIKVRRS PWINQSALPL IQHNLPSEMV NINEFPSDGT MNSNGSDRSN 120 FRTPIIRNVK EEPLMEMENE DRVLYSGNTL AGDGEAEIPV IGMTFNSFEE VREFYGKYAA 180 GKGFDIITRS TKSDVEGKIK YYTLACSRSG KAVCTRKCHL LSKSVVKTNC KARINIRTSR 240 DGKLYLSGFT SEHNHELSHG NSSCNTCTTS LGPHLERLVE YDDQVETQVN NNFQLLASNE 300 NLHSRNEEII NYIARSGSLR LGEGDIESIF DYFVHMQKQD TNFFYVSNMN EECCLRNVFW 360 ADGRSQALYE SFGDVVAFES TYLNSDYKLP LVSIVGVNHH GQLILLGCGI LFDDDKESYM 420 WLFRSWLKCV CGRPPKAIVT NQCPSVQAAV SEVFPETRNR LCLQDIMRTI SLELCGLTNY 480 LAIKNALESS VLESCTIEEF EESWNLFIKE LKLENNDRLR TLYLDRAKWV PAFLKTTFWA 540 GLSSANEQNE NVNGFFDGHI LPETTLKQFM DQFNAMLRSK IEKEEHADSI SSSFVIPTIT 600 DFPLEKQFQD AYTNEMFKLF QEELIGLIYC NASLVSSEGP KLTFEVKDHA RMKDGSRRKV 660 VYEVIFDDAS CNVWCKCCLF ESQGILCRHA VAVLVDQDVN EVPSCYILSR WRKDVNRMHK 720 GVSSCNEVLK SNEQMVCLGK LRTACHSIVE IGAETEEGFE LALNLLDEVK ERMFEHKSES 780 SRNNEEPSGS SAKDGEAAKH YGEELQRSLV VRRRGRPPTK KKKVHFSPDT WTNNPSARNN 840 SNGQNLRGNA DTLTFNASFG GS

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence

MNKMYQSTTW LHYSGTNCDD ETWFPNASVH LFWKLFPPKT TCITLTLALL NGWWSPRTFS  60
MINLENPWEI LDGFIKVRRS PWINQSALPL IQHNLPSEMV NINEFPSDGT MNSNGSDRSN  120
FRTPIIRNVK EEPLMEMENE DRVLYSGNTL AGDGEAEIPV IGMTFNSFEE VREFYGKYAA  180
GKGFDIITRS TKSDVEGKIK YYTLACSRSG KAVCTRKCHL LSKSVVKTNC KARINIRTSR  240
DGKLYLSGFT SEHNHELSHG NSSCNTCTTS LGPHLERLVE YDDQVETQVN NNFQLLASNE  300
NLHSRNEEII NYIARSGSLR LGEGDIESIF DYFVHMQKQD TNFFYVSNMN EECCLRNVFW  360
ADGRSQALYE SFGDVVAFES TYLNSDYKLP LVSIVGVNHH GQLILLGCGI LFDDDKESYM  420
WLFRSWLKCV CGRPPKAIVT NQCPSVQAAV SEVFPETRNR LCLQDIMRTI SLELCGLTNY  480
LAIKNALESS VLESCTIEEF EESWNLFIKE LKLENNDRLR TLYLDRAKWV PAFLKTTFWA  540
GLSSANEQNE NVNGFFDGHI LPETTLKQFM DQFNAMLRSK IEKEEHADSI SSSFVIPTIT  600
DFPLEKQFQD AYTNEMFKLF QEELIGLIYC NASLVSSEGP KLTFEVKDHA RMKDGSRRKV  660
VYEVIFDDAS CNVWCKCCLF ESQGILCRHA VAVLVDQDVN EVPSCYILSR WRKDVNRMHK  720
GVSSCNEVLK SNEQMVCLGK LRTACHSIVE IGAETEEGFE LALNLLDEVK ERMFEHKSES  780
SRNNEEPSGS SAKDGEAAKH YGEELQRSLV VRRRGRPPTK KKKVHFSPDT WTNNPSARNN  840
SNGQNLRGNA DTLTFNASFG GS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-107	FAR1 family protein