PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984854.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 514aa MW: 56054.1 Da PI: 6.944

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55	2.2e-17	132	220	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+ + +L++a+ e+ +l+rg+l+ +Weev++++ r + ++s +qCk+k +nl+kryk ++++ ++ +++s++p+++++e XP_024984854.1 132 EWTDAAIACLLDAYLEKFLQLNRGNLRVRDWEEVAAVVseRCEHQSKSVEQCKNKVDNLKKRYKLERQRIMNNnGGNTTSHWPWYKNME 220 5***********************************655566789*************9998765552477888******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MASCDDEFTL IGDDTTNSHH TNATFHHHLS AAAQLLKAPA FNAPPPPRPT QVAQANGEGY 60 IEDAFGSQPM VVVTYENESD PNRSGVSGAR NEKRSDRDEL SDGGTPYSYN KKARITGSSS 120 GGGGEYRKDR EEWTDAAIAC LLDAYLEKFL QLNRGNLRVR DWEEVAAVVS ERCEHQSKSV 180 EQCKNKVDNL KKRYKLERQR IMNNNGGNTT SHWPWYKNME QIVGNSLPLK AVLDEDKSVG 240 GLNSSGRQSK RYTTATSSPS GQITHMEPKL VTNARWRRVV FKISGSALAG TGSQNIDPKV 300 AMLIAREVSM ACQIGVEVAI VVGGRNFFCG DTWVTAPGLD RSTAHHIGMM ATMMNSILLQ 360 STLEKLGVQA RVQSVLCMPE VSEPYNRQRA IRHLEKGRVV IFGGIGAGTG NPLFSTDTAA 420 ALRASEIHAD AVVKGTSLHG IYECDSISNV GYEHISFREL ASRGPSPMDM MATTFCEENG 480 IPVVIFNLHE PGNISRALSG EHIGTLIDQT GIIC

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MASCDDEFTL IGDDTTNSHH TNATFHHHLS AAAQLLKAPA FNAPPPPRPT QVAQANGEGY  60
IEDAFGSQPM VVVTYENESD PNRSGVSGAR NEKRSDRDEL SDGGTPYSYN KKARITGSSS  120
GGGGEYRKDR EEWTDAAIAC LLDAYLEKFL QLNRGNLRVR DWEEVAAVVS ERCEHQSKSV  180
EQCKNKVDNL KKRYKLERQR IMNNNGGNTT SHWPWYKNME QIVGNSLPLK AVLDEDKSVG  240
GLNSSGRQSK RYTTATSSPS GQITHMEPKL VTNARWRRVV FKISGSALAG TGSQNIDPKV  300
AMLIAREVSM ACQIGVEVAI VVGGRNFFCG DTWVTAPGLD RSTAHHIGMM ATMMNSILLQ  360
STLEKLGVQA RVQSVLCMPE VSEPYNRQRA IRHLEKGRVV IFGGIGAGTG NPLFSTDTAA  420
ALRASEIHAD AVVKGTSLHG IYECDSISNV GYEHISFREL ASRGPSPMDM MATTFCEENG  480
IPVVIFNLHE PGNISRALSG EHIGTLIDQT GIIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein