PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024984815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 254aa MW: 28696.1 Da PI: 6.8875 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.7 | 1.3e-20 | 74 | 127 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++++eqle+Le+ F+++++++ +++ +LA++lgL+ rq+ vWFqNrRa++k XP_024984815.1 74 KKKRLSSEQLEALENTFQEEKKLDPDTKMKLAHELGLQPRQIAVWFQNRRARWK 127 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.8 | 1.3e-37 | 73 | 165 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rls+eq+++LE++F+ee+kL+p+ K++la+eLglqprq+avWFqnrRAR+k+kqlE y+ Lk+++da+++e+++L++ev +Lr+ lke XP_024984815.1 73 EKKKRLSSEQLEALENTFQEEKKLDPDTKMKLAHELGLQPRQIAVWFQNRRARWKAKQLECLYDNLKQEFDAVSREKQKLQEEVLALRTILKE 165 69**************************************************************************************87775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MEWNSGNPSS RPFIPRSAPQ SSFAFLYNYN NDHYVYPPGV GEMKHQMMQG AVPAGALAMM 60 EMNANEYDNN NQEKKKRLSS EQLEALENTF QEEKKLDPDT KMKLAHELGL QPRQIAVWFQ 120 NRRARWKAKQ LECLYDNLKQ EFDAVSREKQ KLQEEVLALR TILKEQVSKR QGAGSSTGYT 180 YISGEETVES TSVATIRTTT NHHPHQLTLG GQHATTTTAA AAAMDCNYVL NYDPATSMPP 240 TPSYSNWAVL PTYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 103 | KKKRLSSEQLEALENTFQEEKKLDPDTKMK |
2 | 122 | 130 | RRARWKAKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-53 | HD-ZIP family protein |