PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984723.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 420aa MW: 47321.9 Da PI: 5.9694

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984723.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.1e-13	211	257	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + E+ RR+++N++++ L+ l+P++ +K + a+++ A++YI++L XP_024984723.1 211 TKHFATEKHRRQQLNDKYDALKNLVPNP-----TKADRASVVGDAIKYINEL 257 78************************.....9*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MLVNSEMYEG SAYYDPSHLE SLIDHQDDNA LSQTHLHNFH QTPNFSSIEA SADYQLINMD 60 MDHQNQMIHD LNWTTHSHDQ IQMGNDNNCI SNMPLITPNP TPPDLLNLFQ LPRCSNSSIS 120 FSNPTHMDQT SGQVTYDPLL PLNLPPQPPF FRELLHSLPN GYNLTASGSI FGEMDMEREG 180 MHQLYHEGDG VLKFSGDING IVGKGRDVKD TKHFATEKHR RQQLNDKYDA LKNLVPNPTK 240 ADRASVVGDA IKYINELKRE VAELTILVER KRCNRGRMKK HKTEDDSTLD VESISTRPNG 300 GGDHDQQAAY NGNSTSTLRS SWLQRKSKNT EVDVRIIDDE VTIKLVQQKR INCLLFVSKV 360 LDELQLDLHH VGGGLIGDFY SYLFNTKICE GSSVYASAIA NKLIEVVDRH YASIPAATGY

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MLVNSEMYEG SAYYDPSHLE SLIDHQDDNA LSQTHLHNFH QTPNFSSIEA SADYQLINMD  60
MDHQNQMIHD LNWTTHSHDQ IQMGNDNNCI SNMPLITPNP TPPDLLNLFQ LPRCSNSSIS  120
FSNPTHMDQT SGQVTYDPLL PLNLPPQPPF FRELLHSLPN GYNLTASGSI FGEMDMEREG  180
MHQLYHEGDG VLKFSGDING IVGKGRDVKD TKHFATEKHR RQQLNDKYDA LKNLVPNPTK  240
ADRASVVGDA IKYINELKRE VAELTILVER KRCNRGRMKK HKTEDDSTLD VESISTRPNG  300
GGDHDQQAAY NGNSTSTLRS SWLQRKSKNT EVDVRIIDDE VTIKLVQQKR INCLLFVSKV  360
LDELQLDLHH VGGGLIGDFY SYLFNTKICE GSSVYASAIA NKLIEVVDRH YASIPAATGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	1e-80	bHLH family protein